View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_24 (Length: 503)
Name: NF11453A_low_24
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 2 - 503
Target Start/End: Complemental strand, 44694876 - 44694365
Alignment:
| Q |
2 |
atattccaccaatcatcgatcaggtcacaaattagacacaatatcaaacatgcaatcttagagcaatgcatttccaataaatcctacaatatcaaacact |
101 |
Q |
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| T |
44694876 |
atattccaccaattatcgatcaggtcacaaattagacacaatatcaaacatgcaatcttagagcaatgcatttccaataaatcctacaatatcaaacact |
44694777 |
T |
|
| Q |
102 |
ga----------gacactagacacgacattaaagctgacacggtaaccacatgtgtcagacattgtgtaccggacacgcctttagtctggcatataattg |
191 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44694776 |
gacgcaaacacagacactagacacgacattaaagctgacacggtaaccacatgtgtcagacattgtgtaccggacacgcctttagtatggcatataattg |
44694677 |
T |
|
| Q |
192 |
ccttatcaatgccaaaactatgaagattttttaatgctaatttgtatgcctaaacattccttatgtataaagaagtgcagaaagacatgaaagcataaaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694676 |
ccttatcaatgccaaaactatgaagattttttaatgctaatttgtatgcctaaacattccttatgtataaagaagtgcagaaagacatgaaagcataaaa |
44694577 |
T |
|
| Q |
292 |
ggaaattaatgatgaaataaaccttgatattgggaatagagtatgccaaattccccaagtgagacatgtgtgcatacattcttgcttcaactaaagttac |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694576 |
ggaaattaatgatgaaataaaccttgatattgggaatagagtatgccaaattccccaagtgagacatgtgtgcatacattcttgcttcaactaaagttac |
44694477 |
T |
|
| Q |
392 |
cctacgaagcattctagaaaacgactctctatcaaaccgaatctcttcatcttcattttcatcgtctacctcttcatcaactctacaaacatcacattca |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694476 |
cctacgaagcattctagaaaacgactctctatcaaaccgaatctcttcatcttcattttcatcgtctacctcttcatcaactctacaaacatcacattca |
44694377 |
T |
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| Q |
492 |
tcttcgtcgtta |
503 |
Q |
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||| |||||||| |
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| T |
44694376 |
tctccgtcgtta |
44694365 |
T |
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