View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_241 (Length: 290)
Name: NF11453A_low_241
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_241 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 64 - 244
Target Start/End: Original strand, 2821015 - 2821195
Alignment:
| Q |
64 |
gaaaaagatttagtgtgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttggttctccacgat |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2821015 |
gaaaaagatttagtgtgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagcaatttggttctccacgat |
2821114 |
T |
|
| Q |
164 |
acagctcaaagtaaaatatttccactcatcctgcaataatcagcaaaaagtggatcccgttcactgagcgactctggcttc |
244 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
2821115 |
acagctcaaagtaaaatatttcctctcatcctgcaataatcagcaaaaagtggatcccattcactgagcgactgtggcttc |
2821195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 2809740 - 2809828
Alignment:
| Q |
64 |
gaaaaagatttagtgtgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttggttctc |
157 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2809740 |
gaaaaagatttaatgtgtttaattaagctgag-----tatgagataactgacttgattgttttttgtgtcaatgcggacagaaatttggttctc |
2809828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 2761632 - 2761705
Alignment:
| Q |
101 |
tatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttggttctccacgatacagctcaaag |
174 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || || |||||||||||||||||| ||||||||||||| |
|
|
| T |
2761632 |
tatgagataactgacttgattttttcttgtgtcggtgtggccagaaatttggttctccataatacagctcaaag |
2761705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 2793422 - 2793475
Alignment:
| Q |
81 |
tttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtca |
134 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |
|
|
| T |
2793422 |
tttaattaagttgacaattgtatgagataactgactaaattgtttctcgtgtca |
2793475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 2773460 - 2773530
Alignment:
| Q |
82 |
ttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttgg |
152 |
Q |
| |
|
|||||||| ||| ||| | ||||||||| |||| | |||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
2773460 |
ttaattaaattggcaaatgtatgagatacctgagtcgattgtttcttgtgccaatgtggacagcaatttgg |
2773530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 11115092 - 11114997
Alignment:
| Q |
79 |
tgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttggttctccacgatacagctcaaag |
174 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||| |||||||||||| | ||| |||||||| || ||||||| | ||||| |||||||| |
|
|
| T |
11115092 |
tgtttaatttagttgacaattgtatgagataactgactcaattgtttcttgtataaatttggacagaatttgggttctcaatgataccgctcaaag |
11114997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University