View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_243 (Length: 289)
Name: NF11453A_low_243
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_243 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 48017145 - 48017425
Alignment:
| Q |
4 |
atgcaatgcatgaaaatagtattgtaaatacattttacatgtcaagtttcattgaaatcacttatttgttttttggtttctggttcatgaaattctcagt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48017145 |
atgcaatgcatgaaaatagtattgtaaatacattttacatgtcaagtttcattgaaatcactaatttgttttttggtttctggttcatcaaattctcagt |
48017244 |
T |
|
| Q |
104 |
tcttgcagaccaacataaggatgatataattattatctctaagtgatatgaaattataattgataacgaataaatcatacataccgacataggcaaagag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48017245 |
tcttgcagaccaacataaggatgatataattattatctctaagtgatatgaaattataattgataacgaataaatcatacataccgacataggcaaagag |
48017344 |
T |
|
| Q |
204 |
aacacaatacacggctgctactattggcaatggtattgcagcaatcactgctccaaatttacctgatttataaacccggat |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48017345 |
aacacaatacacggctgctactattggcaatggtattgcagcaatcactgctccaaatttacctgatttataaacccggat |
48017425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University