View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_248 (Length: 288)
Name: NF11453A_low_248
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_248 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 32910531 - 32910269
Alignment:
| Q |
20 |
cataaaatgttattgtcaccttattaaaaaactcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctacc |
119 |
Q |
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| T |
32910531 |
cataaaatgttattgtcaccttattaaaaaactcaacatctttgccaatatgaagaagatctaagttctgatcaaaatggtaaacatgaatacggctacc |
32910432 |
T |
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| Q |
120 |
agtgctaccaacaccaaactcgacagcataagaggaaattgtttcttgttgttggaaaatctttcgattagtgagtaggttgtttcctaaatattgtgag |
219 |
Q |
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|||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32910431 |
agtgctaccagcatcaaacacgacagcataagaggaaattgtttcttgtttttggaaaatctttcgattagtgagtaggttgtttcctaaatattgtgag |
32910332 |
T |
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| Q |
220 |
gaagtgattgcaggcattaacaagagtagaacagtggtgattagtgtaattaggaactccata |
282 |
Q |
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| T |
32910331 |
gaagtgattgcaggcattaacaagagtagaacagtggtgattagtgtaattaggaactccata |
32910269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 35 - 281
Target Start/End: Complemental strand, 32932368 - 32932122
Alignment:
| Q |
35 |
tcaccttattaaaaaactcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccaacacc |
134 |
Q |
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| T |
32932368 |
tcaccttgtcaacaaactcaatatcattgccaatgtgaagaagatctaagttctggtcaaaatggtaaacatggacacgagtaccagtgctaccagcatc |
32932269 |
T |
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| Q |
135 |
aaactcgacagcataagaggaaattgtttcttgttgttggaaaatctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggc |
234 |
Q |
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| T |
32932268 |
aaatatgacagcgtaagatgttaaggtttcttgtttttggaaaatctttcgattagtgagtaggttgtttcctaaatattgggaggaagtgattgcaggc |
32932169 |
T |
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| Q |
235 |
attaacaagagtagaacagtggtgattagtgtaattaggaactccat |
281 |
Q |
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| T |
32932168 |
attaacaagagtaaaaaagtggtaatgagtgtaattaggaactccat |
32932122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 26 - 196
Target Start/End: Complemental strand, 32921914 - 32921744
Alignment:
| Q |
26 |
atgttattgtcaccttattaaaaaactcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgct |
125 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||| ||||||||||| |||||||| | |||||| |||||||| |
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| T |
32921914 |
atgttattgtcaccttattataaaactcaacatctttaccaacatgaagaagatttaagttttgatcaaaatggtaaacatggacacggcttccagtgct |
32921815 |
T |
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| Q |
126 |
accaacaccaaactcgacagcataagaggaaattgtttcttgttgttggaaaatctttcgattagtgagta |
196 |
Q |
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| T |
32921814 |
accagcatcaaacacaacagcataagaggaaattggttcttgttttgggaaaatcttacggttagtgagta |
32921744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 250
Target Start/End: Complemental strand, 32940594 - 32940381
Alignment:
| Q |
37 |
accttattaaaaaactcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccaacaccaa |
136 |
Q |
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||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||| || ||| |
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| T |
32940594 |
accttattataaaactcaacatcgttgccaatgtgaagaagatctaagttctgatcaaaatggtagacatgaacacggctaccggtgctaccagcatcaa |
32940495 |
T |
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| Q |
137 |
actcgacagcataagaggaaattgtttcttgttgttggaaa-atctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggca |
235 |
Q |
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| T |
32940494 |
agacgacagcgtacgaggttagagtttcttgtt-ttggaaatattttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggca |
32940396 |
T |
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| Q |
236 |
ttaacaagagtagaa |
250 |
Q |
| |
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| T |
32940395 |
tcaagaagagtagaa |
32940381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 32897550 - 32897473
Alignment:
| Q |
52 |
tcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctacca |
129 |
Q |
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| T |
32897550 |
tcaagatctttgccaatgtgaacaagatctaaattctgatcaaaatgaaaaacatgaacacggctaccagagctacca |
32897473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 26 - 196
Target Start/End: Complemental strand, 11822434 - 11822264
Alignment:
| Q |
26 |
atgttattgtcaccttattaaaaaactcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgct |
125 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||| ||||||||||| |||||||| | |||||| |||||||| |
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| T |
11822434 |
atgttattgtcaccttattataaaactcaacatctttaccaacatgaagaagatttaagttttgatcaaaatggtaaacatggacacggcttccagtgct |
11822335 |
T |
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| Q |
126 |
accaacaccaaactcgacagcataagaggaaattgtttcttgttgttggaaaatctttcgattagtgagta |
196 |
Q |
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|||| || ||||| | ||||| |||||||||||||||||||||| | |||||||||| || |||||||||| |
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| T |
11822334 |
accagcatcaaacacaacagcgtaagaggaaattgtttcttgttttgggaaaatcttacggttagtgagta |
11822264 |
T |
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