View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_250 (Length: 287)
Name: NF11453A_low_250
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_250 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 29013494 - 29013767
Alignment:
| Q |
8 |
tgagatgaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatc |
107 |
Q |
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| T |
29013494 |
tgagaagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatc |
29013593 |
T |
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| Q |
108 |
agagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013594 |
agagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaa |
29013693 |
T |
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| Q |
208 |
ccaatagcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013694 |
ccaatagcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
29013767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 29366182 - 29366455
Alignment:
| Q |
8 |
tgagatgaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatc |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366182 |
tgagaagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatc |
29366281 |
T |
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| Q |
108 |
agagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366282 |
agagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaa |
29366381 |
T |
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| Q |
208 |
ccaatagcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
29366382 |
ccaatagcataccattgacgtttccatagtgaatgtgatgctcttactcctcgagctgatattaagcatatttc |
29366455 |
T |
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