View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_253 (Length: 286)
Name: NF11453A_low_253
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_253 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 50371221 - 50371499
Alignment:
| Q |
7 |
tgagatgaattgtggggagagagtaacatggttttcatgtgccaaatgaaaggtaaagtcaccatcaacttaatttaaagactatgacctttgcttgggt |
106 |
Q |
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| T |
50371221 |
tgagaagaattgtggggagagagtaacatggttttcatgtgccaaatgaaaggtaaagtcaccatcaacttaatttaaagactatgacatttgcttgagt |
50371320 |
T |
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| Q |
107 |
----tacacttcttagcgcatgcatcatatatgttggtaaagaatagaaattagattgctggccttttctatctctttcannnnnnnctctccaattaat |
202 |
Q |
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| T |
50371321 |
tacgtacacttcttagcgcatgcatcatatatgttggtaaagaacagaaattagattgctggccttttctatctctttcatttttttctctccaattaat |
50371420 |
T |
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| Q |
203 |
ctaattcgtagaacatgaagagtctatgcaagaaaggagacatccaccttaactagttcctcacatagaaatagttaatg |
282 |
Q |
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| T |
50371421 |
ctcattcgtagatcatgaagagtctatgcaaggaaggtgacatcca-cttaactagttcctcacatagaaatagttaatg |
50371499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 55075127 - 55075052
Alignment:
| Q |
200 |
aatctaattcgtagaacatgaagagtctatgcaagaaaggagacatccaccttaactagttcctcacatagaaatag |
276 |
Q |
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| T |
55075127 |
aatctcattcgcagaacatgaagagtctatgcaaggaaggtgacatcca-cttaactagttccccatatagaaatag |
55075052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 55075264 - 55075194
Alignment:
| Q |
7 |
tgagatgaattgtggggagagagtaacatggt-tttcatgtgccaaatgaaaggtaaagtcaccatcaactt |
77 |
Q |
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| T |
55075264 |
tgagatgatttgtggggagaga-taacatggactttcatgtgccaagtgaaaggttaagtcacaatcaactt |
55075194 |
T |
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