View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_254 (Length: 286)
Name: NF11453A_low_254
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_254 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 22720208 - 22720461
Alignment:
| Q |
20 |
tcatggtctaaaatctttttattgcctaaagctattaatggagtcatccatgagaatgtaagaatgctgaaaaatccagcatttgaataactggttgaaa |
119 |
Q |
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||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22720208 |
tcatggtttaaagtctttttattgcctaaagctattagtggagtcatccatgagaatgtaagaatgctaaaaaatccagcatttgaataactggttgaac |
22720307 |
T |
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| Q |
120 |
tttcatttcttagtgtctttttggaatcagaattgttgttgcttacactaacttcaccattcaaaagggtttcttcaagaggggcaagtttagtcatatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| |||||||| |
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| T |
22720308 |
tttcatttcttagtgtctttttggaatcagaattgttgttgcttacactatcttcaccattcaaaagggactcttcaagagaggcaagtttggtcatatt |
22720407 |
T |
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| Q |
220 |
tcaaacagaaattccaaaat----aacaaagagacctgtaatagaggaaccttt |
269 |
Q |
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||||||||| ||||| || || ||||||||||||||||||| ||||||| |
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| T |
22720408 |
gtaaacagaaaatccaacatgacaaagaaagagacctgtaatagagaaaccttt |
22720461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 22738447 - 22738248
Alignment:
| Q |
20 |
tcatggtctaaaatctttttattgcctaaagctattaatggagtcatccatgagaatgtaagaatgctgaaaaatccagcatttgaataactggttgaaa |
119 |
Q |
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||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22738447 |
tcatggtttaaagtctttttattgcctaaagctattagtggagtcatccatgagaatgtaagaatgcttaaaaatccagcatttgaataactggttgaac |
22738348 |
T |
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| Q |
120 |
tttcatttcttagtgtctttttggaatcagaattgttgttgcttacactaacttcaccattcaaaagggtttcttcaagaggggcaagtttagtcatatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22738347 |
tttcatttcttagtgtctttttggaatcagaattgttgttgcttacactagcttcaccattcaaaagggattcttcaagaggggcaagtttagtcatatt |
22738248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 22728542 - 22728795
Alignment:
| Q |
20 |
tcatggtctaaaatctttttattgcctaaagctattaatggagtcatccatgagaatgtaagaatgctgaaaaatccagcatttgaataactggttgaaa |
119 |
Q |
| |
|
|||||||||||| |||||||| | ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
22728542 |
tcatggtctaaagtctttttacttcctaaagttattagtggagtcatccatgagaatgtaacaatgctgaaaaatccagcattcaaataactggttgaaa |
22728641 |
T |
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| Q |
120 |
tttcatttcttagtgtctttttggaatcagaattgttgttgcttacactaacttcaccattcaaaagggtttcttcaagaggggcaagtttagtcatatt |
219 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||| |||||||| |
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| T |
22728642 |
tttcatttcttagtgtctttttggaatcaaaattgttgttgcttacagtaccttcaccattcaaaagggactcttcaagagaggcaagtttggtcatatt |
22728741 |
T |
|
| Q |
220 |
tcaaacagaaattccaaaataac----aaagagacctgtaatagaggaaccttt |
269 |
Q |
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||||||||| ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
22728742 |
gtaaacagaaaatccaacataacaaagaaagagacctgtaatagaggaaccttt |
22728795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 5591010 - 5590757
Alignment:
| Q |
20 |
tcatggtctaaaatctttttattgcctaaagctattaatggagtcatccatgagaatgtaagaatgctgaaaaatccagcatttgaataactggttgaaa |
119 |
Q |
| |
|
|||||||||||| |||||||| | ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
5591010 |
tcatggtctaaagtctttttacttcctaaagttattagtggagtcatccatgagaatgtaacaatgctgaaaaatccagcattcaaataactggttgaaa |
5590911 |
T |
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| Q |
120 |
tttcatttcttagtgtctttttggaatcagaattgttgttgcttacactaacttcaccattcaaaagggtttcttcaagaggggcaagtttagtcatatt |
219 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||| |||||||| |
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| T |
5590910 |
tttcatttcttagtgtctttttggaatcaaaattgttgttgcttacagtaccttcaccattcaaaagggactcttcaagagaggcaagtttggtcatatt |
5590811 |
T |
|
| Q |
220 |
tcaaacagaaattccaaaataac----aaagagacctgtaatagaggaaccttt |
269 |
Q |
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||||||||| ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
5590810 |
gtaaacagaaaatccaacataacaaagaaagagacctgtaatagaggaaccttt |
5590757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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