View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_257 (Length: 286)
Name: NF11453A_low_257
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_257 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 45123309 - 45123582
Alignment:
| Q |
1 |
actagtctatgtgttgtaaaagtttgcatatagtattattttctagttgttattggacaatgatcatagtttcgtctccgctttttgaagtttccaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45123309 |
actagtctatgtgttgtaaaagtttgcatatagtattattttctagttgtcattggacaatgatcatagtttcgtctccgctttttgaagtttctaccta |
45123408 |
T |
|
| Q |
101 |
tgttgtgattgtgtttctttattttctctatgttgatcttttccaacacaattttgtcttcaactatgaaaaatgtttctcaaatgtatccttctatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45123409 |
tgttgtgattgtgtttctttattttctctatgttgatcttttccaacacaattttgtcttcaactatgaaaaatgtttctcaaatatatccttctatgaa |
45123508 |
T |
|
| Q |
201 |
tgtctattacagaatattatgaatattagtgatgatgtattgattaaatgtatttttaacggtcttcatctcag |
274 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45123509 |
tgtctattacaaaatattatgaatattagtgatgatgtattgattaaatgtatttttaacggtcttcatctcag |
45123582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 22190691 - 22190644
Alignment:
| Q |
14 |
ttgtaaaagtttgcatatagtattattttctagttgttattggacaat |
61 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
22190691 |
ttgtaaaaatttgcatatagtgttattctctagttgtcattggacaat |
22190644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University