View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_258 (Length: 286)
Name: NF11453A_low_258
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_258 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 73 - 280
Target Start/End: Complemental strand, 33304140 - 33303933
Alignment:
| Q |
73 |
tttgaaatggagaagaacaattttctagtcctgacacactaggtccattcaaatgacgttggctcgtcattcgcttgtcatccaagcccaagcaaacatt |
172 |
Q |
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| T |
33304140 |
tttgaaatggagaagagcaattttctagtcctggcacactaggtccattcaaatgacgttggcccgtcattcgcttgtcgtccaagcccaagcaaacatg |
33304041 |
T |
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| Q |
173 |
ttttcgtttcaaaccttttatttaggaaagaaatttgctgcatgcacgccctttgtacttccgacaccttttgttttaattttataatgcttcattgtaa |
272 |
Q |
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| T |
33304040 |
ttttcgtttcaaactttttatttaggaaagaaatttgctgcatgcacgccctttgtacttcgtacacctttagttttaattttataatggtgcattgtaa |
33303941 |
T |
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| Q |
273 |
ttggggtc |
280 |
Q |
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|||||||| |
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| T |
33303940 |
ttggggtc |
33303933 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 79633 - 79670
Alignment:
| Q |
60 |
gggaataagcaattttgaaatggagaagaacaattttc |
97 |
Q |
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| T |
79633 |
gggaataagcaattttgaaagggagaagaacaattttc |
79670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 17145988 - 17145946
Alignment:
| Q |
56 |
gggtgggaataagcaattttgaaatggagaagaacaattttct |
98 |
Q |
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| T |
17145988 |
gggtgagaatgagcaattttgaaatggagaagagcaattttct |
17145946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 24128229 - 24128188
Alignment:
| Q |
56 |
gggtgggaataagcaattttgaaatggagaagaacaattttc |
97 |
Q |
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| T |
24128229 |
gggtgggaatgagcaattttgaaagggagaaaaacaattttc |
24128188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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