View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_26 (Length: 482)

Name: NF11453A_low_26
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_26
NF11453A_low_26
[»] chr6 (12 HSPs)
chr6 (226-388)||(2588765-2588927)
chr6 (63-136)||(2589071-2589144)
chr6 (292-383)||(3768053-3768144)
chr6 (292-381)||(31954788-31954877)
chr6 (422-478)||(2588694-2588750)
chr6 (310-390)||(357139-357223)
chr6 (108-145)||(2589020-2589057)
chr6 (305-388)||(179323-179406)
chr6 (310-388)||(33565568-33565645)
chr6 (305-352)||(8149684-8149731)
chr6 (341-390)||(3159705-3159754)
chr6 (344-390)||(13657132-13657180)
[»] chr1 (18 HSPs)
chr1 (303-389)||(18919256-18919342)
chr1 (303-387)||(34462722-34462806)
chr1 (292-387)||(1640237-1640332)
chr1 (292-389)||(40619567-40619663)
chr1 (310-390)||(37705310-37705390)
chr1 (315-388)||(47853581-47853654)
chr1 (341-387)||(5327636-5327682)
chr1 (309-384)||(1607324-1607399)
chr1 (308-390)||(5327737-5327819)
chr1 (309-387)||(8301760-8301838)
chr1 (356-390)||(52413962-52413996)
chr1 (312-347)||(24439200-24439235)
chr1 (312-347)||(28924126-28924161)
chr1 (314-388)||(8297992-8298066)
chr1 (356-390)||(14499734-14499768)
chr1 (356-390)||(28773096-28773130)
chr1 (345-387)||(31820679-31820721)
chr1 (312-384)||(36438340-36438412)
[»] chr4 (17 HSPs)
chr4 (289-387)||(37861163-37861261)
chr4 (289-390)||(46963911-46964012)
chr4 (289-390)||(46362789-46362890)
chr4 (292-390)||(19399832-19399930)
chr4 (292-390)||(16692071-16692169)
chr4 (289-387)||(30468728-30468826)
chr4 (305-390)||(53671616-53671701)
chr4 (305-390)||(30666829-30666914)
chr4 (303-387)||(44540183-44540267)
chr4 (356-390)||(53133447-53133481)
chr4 (308-360)||(49014507-49014559)
chr4 (356-390)||(2554213-2554247)
chr4 (356-390)||(37056124-37056158)
chr4 (356-390)||(45891763-45891797)
chr4 (356-385)||(37861309-37861338)
chr4 (356-388)||(26711519-26711551)
chr4 (311-390)||(32280387-32280467)
[»] chr5 (9 HSPs)
chr5 (303-387)||(6825446-6825530)
chr5 (303-390)||(523625-523712)
chr5 (292-387)||(5736045-5736140)
chr5 (303-390)||(30210-30297)
chr5 (292-366)||(15472834-15472908)
chr5 (356-388)||(3557868-3557900)
chr5 (356-390)||(4982453-4982487)
chr5 (356-390)||(30873089-30873123)
chr5 (289-381)||(22874200-22874292)
[»] chr2 (15 HSPs)
chr2 (292-390)||(5577964-5578062)
chr2 (341-390)||(34929307-34929356)
chr2 (310-390)||(26009660-26009740)
chr2 (289-390)||(35977286-35977387)
chr2 (293-381)||(20556752-20556840)
chr2 (337-390)||(32644922-32644975)
chr2 (305-389)||(37624934-37625017)
chr2 (347-390)||(17696150-17696193)
chr2 (356-390)||(44966150-44966184)
chr2 (341-387)||(20683659-20683705)
chr2 (293-387)||(34074123-34074217)
chr2 (305-390)||(4860542-4860626)
chr2 (306-387)||(13748052-13748133)
chr2 (341-390)||(18734554-18734603)
chr2 (356-389)||(34504159-34504192)
[»] chr7 (12 HSPs)
chr7 (292-387)||(21212721-21212816)
chr7 (289-367)||(47375845-47375923)
chr7 (336-387)||(676211-676262)
chr7 (292-352)||(16831650-16831710)
chr7 (303-359)||(39511188-39511244)
chr7 (310-382)||(42244473-42244545)
chr7 (311-390)||(32958171-32958250)
chr7 (311-388)||(20011204-20011282)
chr7 (356-390)||(33645318-33645352)
chr7 (356-390)||(38318949-38318983)
chr7 (292-390)||(38850486-38850584)
chr7 (351-388)||(48047002-48047039)
[»] chr8 (10 HSPs)
chr8 (292-390)||(18181752-18181850)
chr8 (292-372)||(43108685-43108765)
chr8 (337-390)||(38666345-38666398)
chr8 (303-371)||(7637592-7637660)
chr8 (292-390)||(7042570-7042668)
chr8 (356-388)||(34702672-34702704)
chr8 (356-390)||(10361254-10361288)
chr8 (360-390)||(30069850-30069880)
chr8 (314-384)||(33274221-33274291)
chr8 (344-388)||(6108728-6108772)
[»] chr3 (12 HSPs)
chr3 (341-387)||(32733594-32733640)
chr3 (292-382)||(39956197-39956286)
chr3 (345-387)||(53683922-53683964)
chr3 (356-390)||(54362012-54362046)
chr3 (354-390)||(4127500-4127536)
chr3 (340-390)||(38672850-38672900)
chr3 (356-390)||(53287383-53287417)
chr3 (358-387)||(33967915-33967944)
chr3 (308-385)||(50129033-50129110)
chr3 (328-389)||(51386872-51386933)
chr3 (356-388)||(9644589-9644621)
chr3 (292-364)||(45318249-45318321)
[»] scaffold0024 (1 HSPs)
scaffold0024 (310-390)||(33257-33337)
[»] scaffold0014 (1 HSPs)
scaffold0014 (356-390)||(100160-100194)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 2e-72; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 226 - 388
Target Start/End: Complemental strand, 2588927 - 2588765
Alignment:
Q  226 cttgtccaacttcgtatattcgctcacttcctccctatatagacattgaatgcacaattatccaactttttaaattatcaagatattgaatgcacaattt 325  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  2588927 cttgtccaacttcgtatattcgctcactttctccctatatagacattgaatgcacaattgtccaactttttaaactatcaagatattgaatgcacaattt 2588828  T
Q  326 tcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttc 388  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  2588827 tcaaaattaagtttctacatttggtttataaacttgtgtcttaagggcacaagttaacatttc 2588765  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 2589144 - 2589071
Alignment:
Q  63 tgattttggcagcctacagtaggctaggtttattgacccattgtgttggattcttggtggagtttgaagcattg 136  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2589144 tgatttaggcagcctacagtaggctaggtttattgacccattgtgttggattcttggtggagtttgaagcattg 2589071  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 3768144 - 3768053
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaac 383  Q
    ||||||| || |||||||||||||| |||||||| ||||| |||||||||||| ||| ||  ||||||||||||||||||||||||||||||    
T  3768144 tttttaacttttcaagatattgaatacacaatttccaaaaataagtttttacacttgactactaaacttgtgccttaagggcacaagttaac 3768053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 31954877 - 31954788
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagtta 381  Q
    |||||||||| |||||| |||| ||||| |||||  ||||||||||||||||||||||||| ||||||| |||||||| |||| ||||||    
T  31954877 tttttaaattttcaagacattgtatgcataatttctaaaattaagtttttacatttggcttctaaacttctgccttaaaggcataagtta 31954788  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 2588750 - 2588694
Alignment:
Q  422 aatgtttttcattcaaagaaaaaccaattgttcctccatcagccatattcttcgaca 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  2588750 aatgtttttcattcaaagaaaaaccaattgttcctccatcagccacatttttcgaca 2588694  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 357223 - 357139
Alignment:
Q  310 attgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtg----ccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||||||||| ||| ||| |||||||||||| |||| |||||    |||||||||||||||||| ||||||||    
T  357223 attgaatgcacaattttcaaaaataaatttctacatttggcttctaaatttgtgtcttccttaagggcacaagttagcatttccc 357139  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 2589057 - 2589020
Alignment:
Q  108 ttggattcttggtggagtttgaagcattgttttagttg 145  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2589057 ttggattcttggtggagtttgaagcattgttttagttg 2589020  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 179323 - 179406
Alignment:
Q  305 aagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttc 388  Q
    |||||||||||||||||| |||  ||| ||| |||||||||||| ||||| ||||| |||  |||||| | |||||||||||||    
T  179323 aagatattgaatgcacaaattttgaaaataactttttacatttgtcttattaacttatgcactaagggtataagttaacatttc 179406  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 388
Target Start/End: Original strand, 33565568 - 33565645
Alignment:
Q  310 attgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttc 388  Q
    |||||||||||||||| |||||||| |||| |||||| || || | ||||||| |||||| |||||||||||| |||||    
T  33565568 attgaatgcacaatttccaaaattatgtttctacattaggtttcttaacttgttccttaa-ggcacaagttaaaatttc 33565645  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 8149684 - 8149731
Alignment:
Q  305 aagatattgaatgcacaattttcaaaattaagtttttacatttggctt 352  Q
    |||| ||| ||||||||||||||||||||||||||  |||||||||||    
T  8149684 aagacattaaatgcacaattttcaaaattaagtttcgacatttggctt 8149731  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 3159705 - 3159754
Alignment:
Q  341 tacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||| ||| |||||||||||  |||||| |||||||||||||||||    
T  3159705 tacatttgacttctaaacttgtgcagtaagggtacaagttaacatttccc 3159754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 13657132 - 13657180
Alignment:
Q  344 atttggcttataaacttgtgcct--taagggcacaagttaacatttccc 390  Q
    ||||||||| |||||||||||||  |||||||||||||||| |||||||    
T  13657132 atttggcttctaaacttgtgcctcttaagggcacaagttaaaatttccc 13657180  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 18919342 - 18919256
Alignment:
Q  303 tcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttcc 389  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18919342 tcaagacattgaatgcacaattttcaaaaataagtttctacatttggcttataaacttgtgccttaagggcacaagttaacatttcc 18919256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 34462806 - 34462722
Alignment:
Q  303 tcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    |||||| |||||||||||||||||||||| ||| ||| |||||||| ||| |||||||||| |||||||||||||||||||||||    
T  34462806 tcaagacattgaatgcacaattttcaaaaataaatttctacatttgacttctaaacttgtgtcttaagggcacaagttaacattt 34462722  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 1640237 - 1640332
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    |||||||| | |||||| ||||||||||||||||| |||||||||||| |||||||  ||| |||||||||||||| |||| |||||||| |||||    
T  1640237 tttttaaactttcaagacattgaatgcacaatttttaaaattaagtttctacatttaacttctaaacttgtgcctttagggtacaagttaccattt 1640332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 40619567 - 40619663
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttcc 389  Q
    |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| | |   ||||||  |||||||||||||||| |||||||    
T  40619567 tttttaaacttttaagatattgaatgcacaattttcaaaattaagtttttacatttggcat-ttgtcttgtgttttaagggcacaagttagcatttcc 40619663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 37705390 - 37705310
Alignment:
Q  310 attgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||||||  ||||| |||||| ||||| |||||||| ||| |||||||||| ||||||| ||||||||||||||||||    
T  37705390 attgaatgcattatttttaaaatttagtttctacatttgacttctaaacttgtgtcttaaggacacaagttaacatttccc 37705310  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 47853581 - 47853654
Alignment:
Q  315 atgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttc 388  Q
    |||||||||||  |||||||||| | |||||||  ||||||||||||||| ||| |||||||||||||||||||    
T  47853581 atgcacaatttctaaaattaagtctctacattttacttataaacttgtgcattatgggcacaagttaacatttc 47853654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 5327682 - 5327636
Alignment:
Q  341 tacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  5327682 tacatttagcttctaaacttgtgccttaagggcacaagttaacattt 5327636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 384
Target Start/End: Complemental strand, 1607399 - 1607324
Alignment:
Q  309 tattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaaca 384  Q
    |||||||||||||||||||||| |||| ||| ||||||| | || | |  ||||||| ||||||||||||||||||    
T  1607399 tattgaatgcacaattttcaaagttaaatttctacatttagtttcttatattgtgccctaagggcacaagttaaca 1607324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 5327819 - 5327737
Alignment:
Q  308 atattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||||||||||||||  || |  |||||||||  ||||| |  |||||||||||| ||| ||||||||||||||||||||    
T  5327819 atattgaatgcacaatttcaaataaaaagtttttatgtttggttcttaaacttgtgccctaatggcacaagttaacatttccc 5327737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 387
Target Start/End: Original strand, 8301760 - 8301838
Alignment:
Q  309 tattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    |||||||||||||||||| |||||||||||| ||||||||  || | |||||||| ||||| |   |||||||||||||    
T  8301760 tattgaatgcacaatttttaaaattaagtttctacatttgattttttaacttgtgtcttaaagcagcaagttaacattt 8301838  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 52413962 - 52413996
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||||||||||||||||||||||    
T  52413962 aacttgtgccttaagggcacaagttaacatttccc 52413996  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 24439200 - 24439235
Alignment:
Q  312 tgaatgcacaattttcaaaattaagtttttacattt 347  Q
    |||||||||||||||||||||||| |||||||||||    
T  24439200 tgaatgcacaattttcaaaattaaatttttacattt 24439235  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 28924126 - 28924161
Alignment:
Q  312 tgaatgcacaattttcaaaattaagtttttacattt 347  Q
    |||||||||||||||||||||||| |||||||||||    
T  28924126 tgaatgcacaattttcaaaattaaatttttacattt 28924161  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 8297992 - 8298066
Alignment:
Q  314 aatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttc 388  Q
    |||||||||||||||||||||||||| ||||||  |||| | || || || ||||||||  ||||||| ||||||    
T  8297992 aatgcacaattttcaaaattaagtttctacattgcgctttttaagttatgtcttaagggagcaagttagcatttc 8298066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 14499734 - 14499768
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||||| |||||||||||||||||||||||||    
T  14499734 aacttgtgcgttaagggcacaagttaacatttccc 14499768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 28773096 - 28773130
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||||||||||||| ||||||||    
T  28773096 aacttgtgccttaagggcacaagttagcatttccc 28773130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 31820679 - 31820721
Alignment:
Q  345 tttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    |||| ||||| |||||| |||||||||||||||||||||||||    
T  31820679 tttgacttattaacttgcgccttaagggcacaagttaacattt 31820721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 384
Target Start/End: Complemental strand, 36438412 - 36438340
Alignment:
Q  312 tgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaaca 384  Q
    |||||||| ||||| ||| ||||||||| ||||||| | || | | |||||||| | ||||||||||||||||    
T  36438412 tgaatgcaaaatttccaagattaagtttctacatttagtttcttatcttgtgcccttagggcacaagttaaca 36438340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 289 - 387
Target Start/End: Complemental strand, 37861261 - 37861163
Alignment:
Q  289 aactttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    ||||||||||| | |||||| |||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||    
T  37861261 aactttttaaactttcaagacattgaatgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaagggcacaagttaacattt 37861163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 289 - 390
Target Start/End: Original strand, 46963911 - 46964012
Alignment:
Q  289 aactttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttc 388  Q
    ||||||||||| | |||||| ||||||||||| |||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||    
T  46963911 aactttttaaactttcaagacattgaatgcacgatttccaaaattaagtttctacatttggtttctaaacttgtgccttaagggcacaagttaacatttc 46964010  T
Q  389 cc 390  Q
    ||    
T  46964011 cc 46964012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 390
Target Start/End: Original strand, 46362789 - 46362890
Alignment:
Q  289 aactttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttc 388  Q
    ||||||| ||| | |||||| |||||||||||||||| ||||||||||||| |||| |||  |||||||||||||| |||||||||||||||||||||||    
T  46362789 aacttttaaaactttcaagacattgaatgcacaatttccaaaattaagtttctacagttgttttataaacttgtgctttaagggcacaagttaacatttc 46362888  T
Q  389 cc 390  Q
    ||    
T  46362889 cc 46362890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 292 - 390
Target Start/End: Complemental strand, 19399930 - 19399832
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||| |||||| |||||||||||||||| ||||| ||||||| || ||||||||  |||||||||| |||||||||||||||||| |||||||    
T  19399930 tttttaaattttcaagacattgaatgcacaatttccaaaaataagtttctatatttggctactaaacttgtgtcttaagggcacaagttaatatttccc 19399832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 292 - 390
Target Start/End: Complemental strand, 16692169 - 16692071
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||| || ||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||||| || ||||| |||| ||  |||||||||||    
T  16692169 tttttaacttttcaagatattgaatgcacaattttcaaaaataaatttttatatttggcttctaaacttatgtcttaaaggcataaagtaacatttccc 16692071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 387
Target Start/End: Original strand, 30468728 - 30468826
Alignment:
Q  289 aactttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    ||||||||||| | |||| | |||||||| ||||||| ||||||||||||| || |||||| || |||||||||||||| | |||||||||||||||||    
T  30468728 aactttttaaactttcaacaaattgaatgtacaatttccaaaattaagtttctatatttggtttctaaacttgtgcctttaaggcacaagttaacattt 30468826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 53671616 - 53671701
Alignment:
Q  305 aagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||| ||||||||||||||||||||||||| |||| || ||||||||||| |||| ||||||| |||||| |||||  ||||||||    
T  53671616 aagacattgaatgcacaattttcaaaattatgtttatatatttggcttattaactcgtgccttcagggcaaaagttggcatttccc 53671701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 390
Target Start/End: Complemental strand, 30666914 - 30666829
Alignment:
Q  305 aagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||| ||||||||||||| || |||||  ||  || ||||||||| || | ||||||||||| |||||||||||||||||||||||    
T  30666914 aagacattgaatgcacaagttccaaaaaaaaccttctacatttggtttcttaacttgtgcctcaagggcacaagttaacatttccc 30666829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 44540183 - 44540267
Alignment:
Q  303 tcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    |||||| || |||||||||||||  |||| ||| ||||||| |||||||| ||||||||| ||||||||| | ||||||| ||||    
T  44540183 tcaagacatcgaatgcacaatttctaaaaataaatttttacgtttggcttctaaacttgttccttaaggggaaaagttaatattt 44540267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 53133481 - 53133447
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||||||||||||||||||||||    
T  53133481 aacttgtgccttaagggcacaagttaacatttccc 53133447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 49014559 - 49014507
Alignment:
Q  308 atattgaatgcacaattttcaaaattaagtttttacatttggcttataaactt 360  Q
    |||||||||||||||||  ||||||||| |||||| ||||||||| |||||||    
T  49014559 atattgaatgcacaattcccaaaattaaatttttatatttggcttttaaactt 49014507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 2554213 - 2554247
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||||||||||||| ||||||||    
T  2554213 aacttgtgccttaagggcacaagttagcatttccc 2554247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 37056158 - 37056124
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||| ||||||||||||||||||||    
T  37056158 aacttgtgccttaaaggcacaagttaacatttccc 37056124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 45891797 - 45891763
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||||||||||| |||||||||||||||||||    
T  45891797 aacttgtgccttaagagcacaagttaacatttccc 45891763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 385
Target Start/End: Original strand, 37861309 - 37861338
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacat 385  Q
    ||||||||||||||||||||||||||||||    
T  37861309 aacttgtgccttaagggcacaagttaacat 37861338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 388
Target Start/End: Complemental strand, 26711551 - 26711519
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttc 388  Q
    ||||||||| |||||||||||||||||||||||    
T  26711551 aacttgtgctttaagggcacaagttaacatttc 26711519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 32280387 - 32280467
Alignment:
Q  311 ttgaatgcacaattttcaaaattaagtttt-tacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||||| |||||||||||  || | || || ||||| ||| | ||||| || ||||||||||||||||||||||||||    
T  32280387 ttgaatgcataattttcaaaaaaaaatattctatatttgacttcttaacttatgtcttaagggcacaagttaacatttccc 32280467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 6825446 - 6825530
Alignment:
Q  303 tcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    |||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  6825446 tcaagacattgaatgcacaattttcaaaaataagtttttacgtttggcttttaaacttgtgccttaagggcacaaattaacattt 6825530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 523712 - 523625
Alignment:
Q  303 tcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||| ||| |||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  523712 tcaagacattaaatgcacaattttcaaaaataaatttttatatttggcttctaaacttgtgccttaagggcacaagttaacatttccc 523625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 5736045 - 5736140
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    ||||||| || | |||| |||||||||||||||| ||||| ||||||| |||||||||||  |||||||||  |||||||||||||||||||||||    
T  5736045 tttttaacttttgaagacattgaatgcacaatttccaaaaataagtttctacatttggctactaaacttgtatcttaagggcacaagttaacattt 5736140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 30297 - 30210
Alignment:
Q  303 tcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||| |||||||| ||||||||||||||| | ||| |||||||||||| | ||||| |||||||| || ||| |||| ||||||||    
T  30297 tcaagacattgaatggacaattttcaaaattcaatttctacatttggcttcttaacttatgccttaatggtacatgttagcatttccc 30210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 366
Target Start/End: Complemental strand, 15472908 - 15472834
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgcct 366  Q
    ||||||| || | ||||||||||||||||||||| ||||| ||||||| |||||||  ||| |||||||||||||    
T  15472908 tttttaatttttaaagatattgaatgcacaatttccaaaaataagtttctacatttaacttctaaacttgtgcct 15472834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 3557868 - 3557900
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttc 388  Q
    |||||||||||||||||||||||||||||||||    
T  3557868 aacttgtgccttaagggcacaagttaacatttc 3557900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 4982487 - 4982453
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||||| |||||||||||||||||||||||||    
T  4982487 aacttgtgctttaagggcacaagttaacatttccc 4982453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 30873089 - 30873123
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||||||||||||| ||||||||    
T  30873089 aacttgtgccttaagggcacaagttagcatttccc 30873123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 22874292 - 22874200
Alignment:
Q  289 aactttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagtta 381  Q
    ||||||| ||||| | || | ||||||||||||||||||||||| ||  || ||||| | |||| | ||||| ||||||||  ||||||||||    
T  22874292 aacttttgaaatttttaaaaaattgaatgcacaattttcaaaataaaacttctacatatagcttcttaacttatgccttaaaagcacaagtta 22874200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 390
Target Start/End: Complemental strand, 5578062 - 5577964
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||| | |||||||||| |||||||||||| ||||||||| |||  |||||||| || |||||||||||||||||| ||||| ||||||||||||    
T  5578062 tttttaaactttcaagatattaaatgcacaatttccaaaattaaatttcgacatttggtttctaaacttgtgccttaaggacacaaattaacatttccc 5577964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 34929307 - 34929356
Alignment:
Q  341 tacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34929307 tacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 34929356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 26009660 - 26009740
Alignment:
Q  310 attgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||||||| |||| ||||||||  ||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||    
T  26009660 attgaatgcacgatttccaaaattatatttctacatttagcttctaaacttgtgccttaagggcacaagttagcatttccc 26009740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 289 - 390
Target Start/End: Complemental strand, 35977387 - 35977286
Alignment:
Q  289 aactttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttc 388  Q
    ||||||||||||| |||||| |||||||||| |||||  ||||||||||||||||||| |  || |||||||||  |||||  |||||| ||||||||||    
T  35977387 aactttttaaattttcaagacattgaatgcataatttctaaaattaagtttttacattcgatttttaaacttgtaacttaaaagcacaaattaacatttc 35977288  T
Q  389 cc 390  Q
    ||    
T  35977287 cc 35977286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 381
Target Start/End: Complemental strand, 20556840 - 20556752
Alignment:
Q  293 ttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagtta 381  Q
    ||||||||| |||||| ||||||||||| |||| ||||||||||||| ||||||| | || |||||||||| |||||  ||||||||||    
T  20556840 ttttaaattttcaagacattgaatgcacgatttccaaaattaagtttctacatttagtttctaaacttgtgtcttaaaagcacaagtta 20556752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 32644922 - 32644975
Alignment:
Q  337 tttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  32644922 tttttatatttggcttctaaacttgtgtcttaaaggcacaagttaacatttccc 32644975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 37625017 - 37624934
Alignment:
Q  305 aagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttcc 389  Q
    ||||||||||||||||||||||||| | |   |||||||||||||||| | ||||| |||| ||||| ||||||||| |||||||    
T  37625017 aagatattgaatgcacaattttcaataattcttttttacatttggcttcttaacttatgcc-taaggacacaagttaccatttcc 37624934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 17696150 - 17696193
Alignment:
Q  347 tggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||| ||||||||| |||||||||||||||||||||||||||    
T  17696150 tggcttctaaacttgtaccttaagggcacaagttaacatttccc 17696193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 44966150 - 44966184
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||||||||||||||||||||||    
T  44966150 aacttgtgccttaagggcacaagttaacatttccc 44966184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 20683659 - 20683705
Alignment:
Q  341 tacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    |||||||| ||| |||||||||  |||||||||||||||||||||||    
T  20683659 tacatttgtcttctaaacttgtatcttaagggcacaagttaacattt 20683705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 34074217 - 34074123
Alignment:
Q  293 ttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    ||||||| | |||| | ||||||||||| |||| |||||| || ||| |||||||  ||| ||||||||||  || ||||||||||||| |||||    
T  34074217 ttttaaactttcaaaacattgaatgcacgatttccaaaatgaaatttctacatttaacttctaaacttgtgttttgagggcacaagttagcattt 34074123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 4860542 - 4860626
Alignment:
Q  305 aagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||| ||||||||||||| || ||| |  || ||| |||||||| ||| | ||||| ||||| |||||||||||||||||||||||    
T  4860542 aagacattgaatgcacaagttccaagaaaaactttctacatttgtcttcttaacttatgcct-aagggcacaagttaacatttccc 4860626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 13748133 - 13748052
Alignment:
Q  306 agatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    ||||||| ||| |||||||||||| ||||  ||| ||||||||| || | ||| ||| || ||||||||||||||| |||||    
T  13748133 agatattaaatacacaattttcaagattatatttctacatttggtttcttaacatgttccctaagggcacaagttagcattt 13748052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 18734554 - 18734603
Alignment:
Q  341 tacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||  ||||| |||||||| ||||| ||||||||||||||||||||    
T  18734554 tacatttaacttattaacttgtgtcttaatggcacaagttaacatttccc 18734603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 34504192 - 34504159
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttcc 389  Q
    |||||||| |||||||||||||||||||||||||    
T  34504192 aacttgtgtcttaagggcacaagttaacatttcc 34504159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 21212721 - 21212816
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    ||||||| || |||| | |||||||| | ||||||||||| |||||||||||||||| | | ||||||||||||||||||||| ||||||||||||    
T  21212721 tttttaacttttcaaaacattgaatgtataattttcaaaaataagtttttacatttgacatttaaacttgtgccttaagggcataagttaacattt 21212816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 367
Target Start/End: Original strand, 47375845 - 47375923
Alignment:
Q  289 aactttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgcctt 367  Q
    ||||||||||  | |||||| |||||||||||||||| ||||| ||||||| ||||||||| || ||||||||||||||    
T  47375845 aactttttaatctttcaagacattgaatgcacaatttccaaaaataagtttctacatttggattctaaacttgtgcctt 47375923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 676262 - 676211
Alignment:
Q  336 gtttttacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    |||| ||||||| |||| |||||||||||||| |||||||||||||||||||    
T  676262 gtttatacatttagcttctaaacttgtgccttgagggcacaagttaacattt 676211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 16831650 - 16831710
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggctt 352  Q
    ||||||| || |||||||||||||||||||||||  |||| ||| ||||||||||| ||||    
T  16831650 tttttaacttttcaagatattgaatgcacaatttctaaaaataaatttttacatttagctt 16831710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 39511244 - 39511188
Alignment:
Q  303 tcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaact 359  Q
    |||||| ||||||||||||||||  |||| ||||||||||||| |||||| ||||||    
T  39511244 tcaagacattgaatgcacaatttctaaaaataagtttttacatctggcttctaaact 39511188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 42244473 - 42244545
Alignment:
Q  310 attgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaa 382  Q
    |||||||| ||||||| ||||| ||||||| |||||||   || ||||||||||| |||| ||||||||||||    
T  42244473 attgaatgtacaatttccaaaaataagtttctacatttaaattctaaacttgtgcgttaaaggcacaagttaa 42244545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 390
Target Start/End: Complemental strand, 32958250 - 32958171
Alignment:
Q  311 ttgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||| |||||||| |||| ||   ||||||  ||| |||| | ||||||||||||||||| |||||||||||||||||    
T  32958250 ttgaatacacaatttccaaatttttttttttatctttagcttcttaacttgtgccttaagggtacaagttaacatttccc 32958171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 388
Target Start/End: Complemental strand, 20011282 - 20011204
Alignment:
Q  311 ttgaatgcacaattttcaaaattaa-gtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttc 388  Q
    |||||||||||||||||||||  || |||||||  ||| |||| |||||||||| | | |||||| |||||||||||||    
T  20011282 ttgaatgcacaattttcaaaaaaaaagtttttaagtttagcttttaaacttgtgtccttagggcataagttaacatttc 20011204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 33645318 - 33645352
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||||||||||||| ||||||||    
T  33645318 aacttgtgccttaagggcacaagttagcatttccc 33645352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 38318983 - 38318949
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||| ||||||||||||||||||    
T  38318983 aacttgtgccttaaggacacaagttaacatttccc 38318949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 390
Target Start/End: Complemental strand, 38850584 - 38850486
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||| | |||| | ||||||||||||||||| || || || ||| |||||||| ||| |||| | |||||| |||| || |||||||||| ||||    
T  38850584 tttttaaactttcaaaacattgaatgcacaatttttaacataaaatttctacatttgacttctaaattcgtgcctcaaggacataagttaacatatccc 38850486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 48047002 - 48047039
Alignment:
Q  351 ttataaacttgtgccttaagggcacaagttaacatttc 388  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  48047002 ttattaacttgtgccttaagggcacaagttagcatttc 48047039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 292 - 390
Target Start/End: Original strand, 18181752 - 18181850
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||| || | |||| ||||||||||||||||||||||  |||||| |||||||||||  |||| || |||||||||||||||||||| ||||||||    
T  18181752 tttttaattttttaagacattgaatgcacaattttcaaaaacaagtttctacatttggctattaaatttatgccttaagggcacaagttagcatttccc 18181850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 43108685 - 43108765
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaaggg 372  Q
    |||||||| | |||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||  ||||||||    
T  43108685 tttttaaactttcaagatattaaatgcacaattttcaaaattaagtttttatattcggcttctaaacttgtatcttaaggg 43108765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 38666398 - 38666345
Alignment:
Q  337 tttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  38666398 tttttacatttgacttttaaacttgtgccttaaggacacaagttaacatttccc 38666345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 7637660 - 7637592
Alignment:
Q  303 tcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagg 371  Q
    |||||| ||||||||||||||||||||||  ||  || |||||||| ||| ||||||||||||||||||    
T  7637660 tcaagacattgaatgcacaattttcaaaagaaaaattctacatttgacttctaaacttgtgccttaagg 7637592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 390
Target Start/End: Complemental strand, 7042668 - 7042570
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||| || |||| | ||| |||||||  ||| ||||| ||||||| |||| ||   || |||||||||||||| ||||||||||||||||||||||    
T  7042668 tttttaatttttcaaaacatttaatgcacgttttccaaaaataagtttctacaattaatttctaaacttgtgccttgagggcacaagttaacatttccc 7042570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 388
Target Start/End: Complemental strand, 34702704 - 34702672
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttc 388  Q
    |||||||||||||||||||||||||||||||||    
T  34702704 aacttgtgccttaagggcacaagttaacatttc 34702672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 10361254 - 10361288
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||| ||||||||||||||||||||||    
T  10361254 aacttgtgccttgagggcacaagttaacatttccc 10361288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 390
Target Start/End: Original strand, 30069850 - 30069880
Alignment:
Q  360 tgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||||||||||||||||||    
T  30069850 tgtgccttaagggcacaagttaacatttccc 30069880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 33274291 - 33274221
Alignment:
Q  314 aatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaaca 384  Q
    ||||||||||||| ||  |||||||||||||||| | || | | |||||||| | ||||||||||||||||    
T  33274291 aatgcacaatttttaaggttaagtttttacatttagtttcttatcttgtgcccttagggcacaagttaaca 33274221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 6108772 - 6108728
Alignment:
Q  344 atttggcttataaacttgtgccttaagggcacaagttaacatttc 388  Q
    ||||| ||| ||||||||||  |||||||||||||||||||||||    
T  6108772 atttgccttctaaacttgtgttttaagggcacaagttaacatttc 6108728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 32733640 - 32733594
Alignment:
Q  341 tacatttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||    
T  32733640 tacatttggcttataaacttgtgtcttaagggcacaaattaacattt 32733594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 382
Target Start/End: Original strand, 39956197 - 39956286
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaa 382  Q
    ||||||| || ||| || |||||||||||||||||||||| ||| ||| ||| |||||||| ||||||||||| |||||| || |||||||    
T  39956197 tttttaacttttcatgacattgaatgcacaattttcaaaaataaatttctac-tttggcttctaaacttgtgctttaaggtcataagttaa 39956286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 53683964 - 53683922
Alignment:
Q  345 tttggcttataaacttgtgccttaagggcacaagttaacattt 387  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  53683964 tttggctcattaacttgtgccttaagggcacaagttaacattt 53683922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 54362046 - 54362012
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||||||||||||||||||||||    
T  54362046 aacttgtgccttaagggcacaagttaacatttccc 54362012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 4127500 - 4127536
Alignment:
Q  354 taaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4127500 taaacttgtgccctaagggcacaagttaacatttccc 4127536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 38672850 - 38672900
Alignment:
Q  340 ttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||||| || || |||||||||||||| ||||| ||||||||||||||    
T  38672850 ttacatttgactcattaacttgtgccttaaaggcacgagttaacatttccc 38672900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 53287417 - 53287383
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||| ||||||||||||||||||||||||||    
T  53287417 aacttgtggcttaagggcacaagttaacatttccc 53287383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 33967944 - 33967915
Alignment:
Q  358 cttgtgccttaagggcacaagttaacattt 387  Q
    ||||||||||||||||||||||||||||||    
T  33967944 cttgtgccttaagggcacaagttaacattt 33967915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 385
Target Start/End: Complemental strand, 50129110 - 50129033
Alignment:
Q  308 atattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacat 385  Q
    ||||||||||||||||||||||||  | |||| ||  ||| | || ||||||| ||||  ||||||||||||||||||    
T  50129110 atattgaatgcacaattttcaaaaaaaggtttctatgtttagtttctaaacttatgccccaagggcacaagttaacat 50129033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 51386872 - 51386933
Alignment:
Q  328 aaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttcc 389  Q
    ||||||||||||||| ||||  ||| ||||||| ||  |||||||||||||||| |||||||    
T  51386872 aaaattaagtttttatatttaacttctaaacttatgttttaagggcacaagttagcatttcc 51386933  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 9644589 - 9644621
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttc 388  Q
    |||| ||||||||||||||||||||||||||||    
T  9644589 aactcgtgccttaagggcacaagttaacatttc 9644621  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 45318249 - 45318321
Alignment:
Q  292 tttttaaattatcaagatattgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgc 364  Q
    |||||||| | |||| ||| ||||||||||||||| |||| || |||| || |||||||| || |||||||||    
T  45318249 tttttaaactttcaaaataatgaatgcacaatttttaaaactatgtttctatatttggctcattaacttgtgc 45318321  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 33257 - 33337
Alignment:
Q  310 attgaatgcacaattttcaaaattaagtttttacatttggcttataaacttgtgccttaagggcacaagttaacatttccc 390  Q
    |||||||||||||||||||||| | |||| ||||||||  ||| ||||||| | | |||||| || |||||| ||||||||    
T  33257 attgaatgcacaattttcaaaaattagttattacatttaacttctaaacttatactttaaggacagaagttagcatttccc 33337  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 100160 - 100194
Alignment:
Q  356 aacttgtgccttaagggcacaagttaacatttccc 390  Q
    ||||||||||||||||||| |||||||||||||||    
T  100160 aacttgtgccttaagggcataagttaacatttccc 100194  T

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