View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_261 (Length: 285)

Name: NF11453A_low_261
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_261
NF11453A_low_261
[»] chr1 (10 HSPs)
chr1 (113-219)||(31771322-31771428)
chr1 (113-219)||(7608334-7608440)
chr1 (72-165)||(7608224-7608317)
chr1 (72-165)||(31771212-31771305)
chr1 (19-77)||(7608097-7608155)
chr1 (21-77)||(31771087-31771143)
chr1 (162-219)||(1721556-1721613)
chr1 (162-229)||(17726023-17726089)
chr1 (175-220)||(32440659-32440704)
chr1 (162-220)||(22368196-22368254)
[»] chr3 (10 HSPs)
chr3 (145-224)||(19766009-19766088)
chr3 (175-230)||(11394007-11394062)
chr3 (232-285)||(11427105-11427158)
chr3 (34-74)||(31688056-31688096)
chr3 (175-219)||(46233973-46234017)
chr3 (145-208)||(31687881-31687944)
chr3 (34-74)||(31896771-31896811)
chr3 (34-74)||(31912480-31912520)
chr3 (162-225)||(52130783-52130846)
chr3 (34-74)||(31946128-31946168)
[»] chr2 (5 HSPs)
chr2 (162-233)||(997806-997877)
chr2 (145-220)||(4453777-4453852)
chr2 (175-220)||(9208569-9208614)
chr2 (185-224)||(7161811-7161850)
chr2 (166-229)||(3625169-3625234)
[»] scaffold0152 (1 HSPs)
scaffold0152 (145-219)||(10195-10269)
[»] chr4 (5 HSPs)
chr4 (162-229)||(32651267-32651334)
chr4 (145-229)||(38467690-38467775)
chr4 (145-217)||(3649873-3649945)
chr4 (164-227)||(41810163-41810226)
chr4 (184-219)||(26720237-26720272)
[»] chr6 (3 HSPs)
chr6 (185-230)||(31444760-31444805)
chr6 (184-224)||(27444122-27444162)
chr6 (177-225)||(33054175-33054223)
[»] scaffold0003 (3 HSPs)
scaffold0003 (145-219)||(36988-37062)
scaffold0003 (184-224)||(43199-43239)
scaffold0003 (35-74)||(36837-36876)
[»] scaffold0014 (1 HSPs)
scaffold0014 (184-226)||(32608-32650)
[»] chr8 (2 HSPs)
chr8 (145-219)||(44663663-44663737)
chr8 (145-219)||(35348991-35349066)
[»] chr7 (2 HSPs)
chr7 (175-224)||(16262692-16262741)
chr7 (177-219)||(21820186-21820228)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 31771322 - 31771428
Alignment:
Q  113 gcaaacagattaggtccaagggctgaggtttgttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataa 212  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31771322 gcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaattagggttgggagtgttatttggagtgttaactaggattaggaataa 31771421  T
Q  213 gttagat 219  Q
    |||||||    
T  31771422 gttagat 31771428  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 7608334 - 7608440
Alignment:
Q  113 gcaaacagattaggtccaagggctgaggtttgttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataa 212  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7608334 gcaaacagattagatccaagggctgagatttgttggcgcctaaaacaggagaattagggttgggagtgttatttggagttttaactaggattaggaataa 7608433  T
Q  213 gttagat 219  Q
    |||||||    
T  7608434 gttagat 7608440  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 7608224 - 7608317
Alignment:
Q  72 aatacaattaattttgtcacgtaagaaaggaggnnnnnnnggcaaacagattaggtccaagggctgaggtttgttggcacctaaaataggagaa 165  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  7608224 aatacaattaattttgtcacgtaagaaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaa 7608317  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 31771212 - 31771305
Alignment:
Q  72 aatacaattaattttgtcacgtaagaaaggaggnnnnnnnggcaaacagattaggtccaagggctgaggtttgttggcacctaaaataggagaa 165  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  31771212 aatacaattaattttgtcacgtaagaaaggaggaaaaactggcaaacagattagatccaagggctgaggtttgttggcgcctaaaacaggagaa 31771305  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 7608097 - 7608155
Alignment:
Q  19 ggagagaaaggagggttattggaaaccaataacattaattatttgtcatttacaataca 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608097 ggagagaaaggagggttattggaaaccaataacattaattatttgtcatttacaataca 7608155  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 31771087 - 31771143
Alignment:
Q  21 agagaaaggagggttattggaaaccaataacattaattatttgtcatttacaataca 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31771087 agagaaaggagggttattggaaaccaataacattaattatttgtcatttacaataca 31771143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 1721613 - 1721556
Alignment:
Q  162 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 219  Q
    |||||||||||||| || |||| |||||||||||| ||||||||||||||||||||||    
T  1721613 agaattagggttggcagcgttaattggagtgttaattaggattaggaataagttagat 1721556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 17726089 - 17726023
Alignment:
Q  162 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagat 229  Q
    ||||||||||||   |||| || |||||||||||||||||||||||||||| ||||||||||||||||    
T  17726089 agaattagggttttaagtgataattggagtgttaactaggattaggaataa-ttagattagattagat 17726023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 32440659 - 32440704
Alignment:
Q  175 ggagtgttatttggagtgttaactaggattaggaataagttagatt 220  Q
    |||||| || ||||||||||||||||||||||||||||||||||||    
T  32440659 ggagtgataattggagtgttaactaggattaggaataagttagatt 32440704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 22368196 - 22368254
Alignment:
Q  162 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagatt 220  Q
    ||||||||||||   |||| || ||| ||||||||||||||||||||||||||||||||    
T  22368196 agaattagggttttaagtgataattgaagtgttaactaggattaggaataagttagatt 22368254  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 19766088 - 19766009
Alignment:
Q  145 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagat 224  Q
    ||||| ||||||| || || ||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  19766088 ttggcgcctaaaaaagtaggattagggtttggagtgttaattggagtgttaactaggattagaaataagttagattagat 19766009  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 11394062 - 11394007
Alignment:
Q  175 ggagtgttatttggagtgttaactaggattaggaataagttagattagattagata 230  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  11394062 ggagtgataattggagtgttaactaggattagaaataagttagattagattagata 11394007  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 11427105 - 11427158
Alignment:
Q  232 attacctgattgcaaaatgtaactagttttgcatcttgatactatgaaaatgat 285  Q
    |||||||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  11427105 attacctgattgcaaaatataattagttttgcatcttgataccatgaaaatgat 11427158  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 31688096 - 31688056
Alignment:
Q  34 ttattggaaaccaataacattaattatttgtcatttacaat 74  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31688096 ttattggaaaccgataacattaattatttgtcatttacaat 31688056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 46233973 - 46234017
Alignment:
Q  175 ggagtgttatttggagtgttaactaggattaggaataagttagat 219  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  46233973 ggagtgataattggagtgttaactaggattaggaataagttagat 46234017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 31687944 - 31687881
Alignment:
Q  145 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattagga 208  Q
    ||||| ||||||| || |||||||||||| ||||||| | |||||||||||||||||| |||||    
T  31687944 ttggcgcctaaaaaagtagaattagggtttggagtgtaagttggagtgttaactaggactagga 31687881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 31896771 - 31896811
Alignment:
Q  34 ttattggaaaccaataacattaattatttgtcatttacaat 74  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  31896771 ttattggaaatcgataacattaattatttgtcatttacaat 31896811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 31912480 - 31912520
Alignment:
Q  34 ttattggaaaccaataacattaattatttgtcatttacaat 74  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  31912480 ttattggaaatcgataacattaattatttgtcatttacaat 31912520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 52130846 - 52130783
Alignment:
Q  162 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagatt 225  Q
    ||||||||||||   |||| || ||||||||||| |||||||||| ||||||||||| ||||||    
T  52130846 agaattagggttttaagtggtaattggagtgttacctaggattagaaataagttagactagatt 52130783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 31946128 - 31946168
Alignment:
Q  34 ttattggaaaccaataacattaattatttgtcatttacaat 74  Q
    |||||||||| | |||||||| |||||||||||||||||||    
T  31946128 ttattggaaatcgataacattcattatttgtcatttacaat 31946168  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 997877 - 997806
Alignment:
Q  162 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagatagat 233  Q
    |||||||||||||| || | || ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  997877 agaattagggttggcagggctaattgaagtgttaactaggattaggaataagttagattagattagatagat 997806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 4453852 - 4453777
Alignment:
Q  145 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagatt 220  Q
    ||||| ||||||||   ||||||||||||   |||| || ||||||||||||||||||||||||||||||||||||    
T  4453852 ttggcgcctaaaatcatagaattagggttttaagtggtaattggagtgttaactaggattaggaataagttagatt 4453777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 9208614 - 9208569
Alignment:
Q  175 ggagtgttatttggagtgttaactaggattaggaataagttagatt 220  Q
    |||||| || ||||||||||||||||||||||||||||||||||||    
T  9208614 ggagtgataattggagtgttaactaggattaggaataagttagatt 9208569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 7161850 - 7161811
Alignment:
Q  185 ttggagtgttaactaggattaggaataagttagattagat 224  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  7161850 ttggagtgttaactaggattagaaataagttagattagat 7161811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 3625234 - 3625169
Alignment:
Q  166 ttagggttgggagtgttatttggagtgttaactaggattaggaataagttaga--ttagattagat 229  Q
    |||||||||| |  |||| |||||||||||| |||||||||||||||||||||  |||||||||||    
T  3625234 ttagggttggcatggttaattggagtgttaattaggattaggaataagttagaagttagattagat 3625169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 10269 - 10195
Alignment:
Q  145 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 219  Q
    ||||| ||||||| || |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  10269 ttggcgcctaaaaaagtagaattagggtttggagtgttaattggagtgttaactaggattgggaataagttagat 10195  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 32651267 - 32651334
Alignment:
Q  162 agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagat 229  Q
    ||||||||||||   |||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  32651267 agaattagggttttaagtgataattggagtgttaactaggattaggaataagttagattagattagat 32651334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 38467690 - 38467775
Alignment:
Q  145 ttggcacctaaaatagg-agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattagat 229  Q
    ||||| ||||||||| | ||||||||||||   ||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  38467690 ttggcgcctaaaataagtagaattagggttttaagtgttaattggagtgttaactaggattataaataagttagattagattagat 38467775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 3649945 - 3649873
Alignment:
Q  145 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttag 217  Q
    ||||| ||||||| || ||| ||||||||   ||||||| |||||||||||||||||||||||||||||||||    
T  3649945 ttggcgcctaaaaaagtagatttagggttttaagtgttaattggagtgttaactaggattaggaataagttag 3649873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 41810226 - 41810163
Alignment:
Q  164 aattagggttgggagtgttatttggagtgttaactaggattaggaataagttagattagattag 227  Q
    ||||||||||   |||| || |||||||||||||||||||||| ||||||||||||||||||||    
T  41810226 aattagggttttaagtggtaattggagtgttaactaggattagaaataagttagattagattag 41810163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 26720272 - 26720237
Alignment:
Q  184 tttggagtgttaactaggattaggaataagttagat 219  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720272 tttggagtgttaactaggattaggaataagttagat 26720237  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 31444805 - 31444760
Alignment:
Q  185 ttggagtgttaactaggattaggaataagttagattagattagata 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31444805 ttggagtgttaactaggattaggaataagttagattagattagata 31444760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 27444162 - 27444122
Alignment:
Q  184 tttggagtgttaactaggattaggaataagttagattagat 224  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  27444162 tttggagtgttaactacgattaggaataagttagattagat 27444122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 33054175 - 33054223
Alignment:
Q  177 agtgttatttggagtgttaactaggattaggaataagttagattagatt 225  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  33054175 agtgttaattgtagtgttaattaggattaggaataagttagattagatt 33054223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 36988 - 37062
Alignment:
Q  145 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 219  Q
    ||||| ||||||| || ||||||||| || | ||||||| |||||||||||| ||||||||||||||||||||||    
T  36988 ttggcgcctaaaaaagaagaattaggatttgaagtgttaattggagtgttaattaggattaggaataagttagat 37062  T

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Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 43199 - 43239
Alignment:
Q  184 tttggagtgttaactaggattaggaataagttagattagat 224  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43199 tttggagtgttaactacgattaggaataagttagattagat 43239  T

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Target: scaffold0003; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 36837 - 36876
Alignment:
Q  35 tattggaaaccaataacattaattatttgtcatttacaat 74  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  36837 tattggaaaccgataacattaattatttgtcatttacaat 36876  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 32650 - 32608
Alignment:
Q  184 tttggagtgttaactaggattaggaataagttagattagatta 226  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  32650 tttggagtgttaactaggattagaaataagttagattagatta 32608  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 44663663 - 44663737
Alignment:
Q  145 ttggcacctaaaataggagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 219  Q
    ||||| ||||||||   ||||||||||||   |||| || |||||||||||||||||||||||||||||||||||    
T  44663663 ttggcgcctaaaatcatagaattagggttttaagtggtaattggagtgttaactaggattaggaataagttagat 44663737  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 35349066 - 35348991
Alignment:
Q  145 ttggcacctaaaatagg-agaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagat 219  Q
    ||||| ||||||||| | ||||||||| ||   ||||||| |||||||||||||||||||||| ||||||||||||    
T  35349066 ttggcgcctaaaataagtagaattaggattttaagtgttaattggagtgttaactaggattagaaataagttagat 35348991  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 16262692 - 16262741
Alignment:
Q  175 ggagtgttatttggagtgttaactaggattaggaataagttagattagat 224  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  16262692 ggagtgataattgaagtgttaactaggattaggaataagttagattagat 16262741  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 21820186 - 21820228
Alignment:
Q  177 agtgttatttggagtgttaactaggattaggaataagttagat 219  Q
    ||||||| |||||||||||| ||||||||||||||||||||||    
T  21820186 agtgttaattggagtgttaattaggattaggaataagttagat 21820228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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