View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_265 (Length: 283)
Name: NF11453A_low_265
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_265 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 430801 - 430605
Alignment:
| Q |
13 |
gaccgatacggtgaccggttctttctcaactttgagaagatcactcatgtatctaatgatcttccaaaacaaaaaagtacaaactaaaacaagaacaatt |
112 |
Q |
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| T |
430801 |
gaccaatacggtgaccggttctttctcaactttgagaagatcactcatgtatctaatgatcttccaaaacaaaaaagtacaaactaaaacaagaacaatt |
430702 |
T |
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| Q |
113 |
ttttgaaggactgttttgtccataatatccaaaccaaacatttccatgttgatcactctttgttaggattctaaggaaacaatctacttcaccatctttt |
212 |
Q |
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| T |
430701 |
ttttgaaggactgttttgtccataatatccaaaccaaacatttccatgt---tcactctttgttaggattctaaggaaacaatctacttcaccatctttt |
430605 |
T |
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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 37823218 - 37823290
Alignment:
| Q |
205 |
catcttttctactgccttcattgttccctttgctatcctctttgaaaggtgtatctctttcctatgtacataa |
277 |
Q |
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| T |
37823218 |
catcttttctactgccttcattgttccctttgctatcctctttgaaaggtgtatctctttcctatgtacataa |
37823290 |
T |
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