View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_266 (Length: 283)
Name: NF11453A_low_266
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_266 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 36156 - 36420
Alignment:
| Q |
14 |
gatggacatcctccatatgttcgtccaggattagtaagaagagttgaagcatcactttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
113 |
Q |
| |
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||||||||||||||||||||| |||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36156 |
gatggacatcctccatatgtttgtccaggagtagtaagaagagcttaagcatcaccttcgaatgtcacaaaacttccatgtgattgcaattgtgaagaga |
36255 |
T |
|
| Q |
114 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagtagttaaagaagaagctccaatatttaagaaagcaggcaaatttgtt |
213 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | ||||||| ||||||||||||| |
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| T |
36256 |
tgttgaaagacattactggaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtt |
36355 |
T |
|
| Q |
214 |
tatggttctgttggttgtatcttgggcaatgttcatttcatatatgaagatgtagtgtaatgact |
278 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36356 |
tatggttatgttggttgtattttgggcaatgttcatttcatatatgaagatgtagtgtaatgact |
36420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 23573463 - 23573720
Alignment:
| Q |
14 |
gatggacatcctccatatgttcgtccaggattagtaagaagagttgaagcatcactttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
113 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||||||||| |||||||||| ||| |||| ||||| |||| |||||||||||||||||||||| |
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| T |
23573463 |
gatggacatcctgcatatgttcgtccaggaggagtaagaagagctgaagcatcatcatcggatgtaacaaaacttcgatgtgattgcaattgtgaagagc |
23573562 |
T |
|
| Q |
114 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagtagttaaagaagaagctccaatatttaagaaagcaggcaaatttgtt |
213 |
Q |
| |
|
|| |||||||||||||| ||||||| || ||||| ||||||||||||||||| ||||||||||||| |||||||| | ||||||| ||||||||||||| |
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| T |
23573563 |
tgctgaaagacattactggaataatcaacgaattcggaatcaacaaaaatgacaagttaaagaagaaactccaatactcaagaaagaaggcaaatttgtt |
23573662 |
T |
|
| Q |
214 |
tatggttctgttggttgtatcttgggcaatgttcatttcatatatgaagatgtagtgt |
271 |
Q |
| |
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|||| || ||||||||||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
23573663 |
tatgtttacattggttgtatcttgggcaatgttcattacatatctgacgatgtagtgt |
23573720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 31815098 - 31815058
Alignment:
| Q |
83 |
aagcttccatgtgattgcaattgtgaagagatgttgaaaga |
123 |
Q |
| |
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|||||||||||||||||||||||||||| | || ||||||| |
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|
| T |
31815098 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaaga |
31815058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 13507850 - 13507638
Alignment:
| Q |
14 |
gatggacatcctccatatgttcgtccaggattagtaagaagagttgaagcatcactttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
113 |
Q |
| |
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||||||||||||| |||||||||||||| | |||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
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| T |
13507850 |
gatggacatcctctatatgttcgtccagtagcggtaagaagagttgaagcatcacctttgactgtcacaaagcttccatgtgattgcaattgtgaagaga |
13507751 |
T |
|
| Q |
114 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagtagttaaagaagaagctccaatatttaagaaagcaggcaaatttgtt |
213 |
Q |
| |
|
|| |||| |||||||| ||||||||||||| || |||| |||||||| ||| || ||||||||||||||||||| | ||| ||| ||||||||||||| |
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| T |
13507750 |
tgccgaaaaacattactggaataatgaaggatttcagaataaacaaaaacgagaagctaaagaagaagctccaatactcaaggaagaaggcaaatttgtt |
13507651 |
T |
|
| Q |
214 |
tatggttctgttg |
226 |
Q |
| |
|
|||| || ||||| |
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| T |
13507650 |
tatgattttgttg |
13507638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 13507399 - 13507611
Alignment:
| Q |
14 |
gatggacatcctccatatgttcgtccaggattagtaagaagagttgaagcatcactttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
113 |
Q |
| |
|
|||||||||||||| |||||||||| || | ||||||| || ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
13507399 |
gatggacatcctccgtatgttcgtctagtagcggtaagaatagctgaagcatcaccttcgacggtcacaaagcttccacgtgattgcaattgtgaagaga |
13507498 |
T |
|
| Q |
114 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagtagttaaagaagaagctccaatatttaagaaagcaggcaaatttgtt |
213 |
Q |
| |
|
|| |||||||||||||| |||||||||||| || |||||||||||| ||| ||||||||||||||||| |||| | ||| ||| | ||||||||||| |
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|
| T |
13507499 |
tgctgaaagacattactcaaataatgaaggatttcaaaatcaacaaaaacgagaagttaaagaagaagctctaatactcaaggaagaatgcaaatttgtt |
13507598 |
T |
|
| Q |
214 |
tatggttctgttg |
226 |
Q |
| |
|
||||||| ||||| |
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| T |
13507599 |
tatggttttgttg |
13507611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 7799543 - 7799387
Alignment:
| Q |
83 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagtagttaaagaagaagc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| ||||||||| |||| |||||||||| |
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| T |
7799543 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttgactgtgatattgaaagatttgggaatcaagaaaaatgagaagttgaagaagaagc |
7799444 |
T |
|
| Q |
183 |
tccaatatttaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
239 |
Q |
| |
|
| ||| ||| ||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
7799443 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
7799387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 19398644 - 19398488
Alignment:
| Q |
83 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagtagttaaagaagaagc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| ||||||||| | || |||||||||| |
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|
| T |
19398644 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttaactgtgatattgaaagatttgggaatcaagaaaaatgagaatttgaagaagaagc |
19398545 |
T |
|
| Q |
183 |
tccaatatttaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
239 |
Q |
| |
|
| ||| ||| ||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
19398544 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
19398488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 112
Target Start/End: Original strand, 51253217 - 51253252
Alignment:
| Q |
77 |
gtcacaaagcttccatgtgattgcaattgtgaagag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
51253217 |
gtcacaaagcttccatgtgattgcaattgtgaagag |
51253252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 3585 - 3429
Alignment:
| Q |
83 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagtagttaaagaagaagc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| ||| |||| |||||||||| |
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|
| T |
3585 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
3486 |
T |
|
| Q |
183 |
tccaatatttaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
239 |
Q |
| |
|
| ||| ||| ||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
3485 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
3429 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 22059491 - 22059336
Alignment:
| Q |
83 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagtagttaaagaagaagc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| ||| |||| |||||||||| |
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|
| T |
22059491 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
22059392 |
T |
|
| Q |
183 |
tccaatatttaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
238 |
Q |
| |
|
| ||| ||| ||| ||| || | || |||||||||||| ||||| |||| |||||| |
|
|
| T |
22059391 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
22059336 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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