View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_27 (Length: 482)

Name: NF11453A_low_27
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_27
NF11453A_low_27
[»] chr5 (13 HSPs)
chr5 (6-482)||(9675805-9676277)
chr5 (66-395)||(10213488-10213821)
chr5 (141-265)||(10102410-10102535)
chr5 (128-395)||(12105610-12105852)
chr5 (148-357)||(9677479-9677677)
chr5 (188-395)||(9684234-9684439)
chr5 (295-395)||(13855399-13855500)
chr5 (397-482)||(10213346-10213432)
chr5 (397-462)||(12105489-12105554)
chr5 (292-395)||(10211310-10211414)
chr5 (397-445)||(9684130-9684178)
chr5 (30-107)||(12108062-12108142)
chr5 (397-447)||(10211204-10211254)


Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 6 - 482
Target Start/End: Complemental strand, 9676277 - 9675805
Alignment:
Q  6 gtttggagttggagttaaaaccatcgtaacagattcgtttgatagcgtgaggatttggaaacaaaatacaaatctgcatttgtgtcatttcaaagcagca 105  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9676277 gtttggagttggagttaaaaccatcgtaacagatttgtttgatagcgtgaggatttggaaacaaaatacaaatctgcatttgtgtcatttcaaagcagca 9676178  T
Q  106 ttcataatctctgtatgtccagtgtttgaaaaatgtatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaagttaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9676177 ttcataatctctgtatgtccagtgtttgaaaaatgtatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaagttaaa 9676078  T
Q  206 ttgatcaccttcttatgcaatgaagagtacaatctcgttttatgtttcattggtatttttgaaggaattttgttaaactcaataactgtttatagtacat 305  Q
    ||    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||    
T  9676077 tt----accttcttatgcaatgaagagtactatctcgttttatgtttcattggtatttttgaaggaattttgttaaacctaataactgtttatagtgcat 9675982  T
Q  306 gcgtaacctgttgaccagcgtcagtacactaagataaagttcattgtcttcaacagcattcttctgtattctatagccatggtagattttcatcgtttag 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9675981 gcgtaacctgttgaccagcgtcagtacactaagataaagttcattgtcttcaacagcattcttctgtattctatagccatggtagattttcatcgtttag 9675882  T
Q  406 ctcaatacagctcagctgttggaaggcgagttcttattcacgcagtttcatgtatttgccttgatttgtaaccaagt 482  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  9675881 ctcaatacagctcagctgttgaaaggcgagttcttattcacgctgtttcatgtatttgccctgatttgtaatcaagt 9675805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 66 - 395
Target Start/End: Complemental strand, 10213821 - 10213488
Alignment:
Q  66 acaaaatacaaatctgcatttgt--gtcatttcaaagcagcattcataatctctgtatgtccagtgtttgaaa-aatgtatttgccaagtgcaacaatat 162  Q
    ||||||| |||||||||||||    |||||||  |||||||||||||| | | ||||||  || |||| |||| || |||||||||||||||||||||||    
T  10213821 acaaaatgcaaatctgcatttacaagtcattttgaagcagcattcatactttgtgtatgctcaatgttagaaataaagtatttgccaagtgcaacaatat 10213722  T
Q  163 aaattatacaatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtacaatctcgttttatgtttcattggtatt 262  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  10213721 gaattatacgatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtactatctcgttttatatttcattggtatt 10213622  T
Q  263 tttgaaggaattttgttaaactcaataactgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacag 361  Q
    |||||| ||||| ||||||||  |||||||||||||||| ||||| ||||| ||||||||| |||||||||||| |||||| | |||||||||||||||     
T  10213621 tttgaatgaattatgttaaacctaataactgtttatagtgcatgcataaccggttgaccagtgtcagtacactatgataaactctcattgtcttcaacaa 10213522  T
Q  362 cattcttctgtattctatagccatggtagatttt 395  Q
     |||||| |||| |||||||||||||||||||||    
T  10213521 aattcttttgtactctatagccatggtagatttt 10213488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 10102410 - 10102535
Alignment:
Q  141 tatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaa-aagttaaattgatcaccttcttatgcaatgaagagtacaatc 239  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |||    
T  10102410 tatttgccaagtgcaacaatatgaattatacaatgaattgtactatgttctttaaaaaaagttaaactgatcaccttcttgtgcaatgaagagtactatc 10102509  T
Q  240 tcgttttatgtttcattggtattttt 265  Q
    |||||| || ||||||||||||||||    
T  10102510 tcgtttcatatttcattggtattttt 10102535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 128 - 395
Target Start/End: Complemental strand, 12105852 - 12105610
Alignment:
Q  128 tgtttgaaaaatgtatttgccaagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatg 227  Q
    |||| |||||| || |||||||||| ||||||||| |||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||    
T  12105852 tgttagaaaaaagtgtttgccaagttcaacaatatgaattgtacaatgaagtgttctatgctctttgaaaaagttaaattgatcaccttcttgtgcaatg 12105753  T
Q  228 aagagtacaatctcgttttatgtttcattggtatttttgaaggaattttgttaaactcaataactgtttatagtacatgcgtaacctgttgaccagcgtc 327  Q
    |||||||| ||||| ||| || |||| |||||||| |||                   |||||||| ||||||| ||||| ||| | |||||||| ||||    
T  12105752 aagagtactatctcatttcatctttcgttggtattcttg-------------------aataactg-ttatagtgcatgcataagcagttgaccaacgtc 12105673  T
Q  328 agtacactaagataaagt-tcattgtcttcaacagcattcttctgtattctatagccatggtagatttt 395  Q
    |||||||||| ||||||| |||||||||||||      |||||||||||||||||||||||||||||||    
T  12105672 agtacactaaaataaagtctcattgtcttcaa------tcttctgtattctatagccatggtagatttt 12105610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 357
Target Start/End: Complemental strand, 9677677 - 9677479
Alignment:
Q  148 caagtgcaacaatataaattatacaatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtacaatctcgtttta 247  Q
    ||||||||||||||| |||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||  |||||          ||||| ||| |    
T  9677677 caagtgcaacaatatgaattgtacaatgaagtgttctatgct-tttaaaaaagttaaattgatcaccttcttgcgcaat----------atctcatttca 9677589  T
Q  248 tgtttcattggtatttttgaaggaattttgttaaactcaataactgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-t 346  Q
    | ||||||||||||| ||||| ||| | || |||||| |||||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||||||      
T  9677588 tctttcattggtattcttgaatgaagtatgctaaacttaataactgtt-atagtgcatgcataaccagttgaccagcatcagtacactaagataaagtca 9677490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 395
Target Start/End: Complemental strand, 9684439 - 9684234
Alignment:
Q  188 ttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtacaatctcgttttatgtttcattggtatttttgaaggaattttgttaaactcaa 287  Q
    |||||| |||||||||||| ||||||||||| |||||||||||||||| |||| |||| || ||||| |||||||||||||  || | |||  | | |      
T  9684439 ttctttgaaaaagttaaatcgatcaccttctcatgcaatgaagagtactatcttgtttgatttttcaatggtatttttgaataaagtatgtatagccc-- 9684342  T
Q  288 taactgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaag-ttcattgtcttcaacagcattcttctgtattctatagccatg 386  Q
     |||||||||| || ||||| |||  |||||||  |||| ||||||||||||||| |  || ||||||||||||| |||||| ||||| |||||||||||    
T  9684341 -aactgtttattgtgcatgcataatttgttgacttgcgtaagtacactaagataaggcctctttgtcttcaacaggattcttttgtatgctatagccatg 9684243  T
Q  387 gtagatttt 395  Q
    |||||||||    
T  9684242 gtagatttt 9684234  T

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Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 13855399 - 13855500
Alignment:
Q  295 ttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacagcattcttctgtattctatagccatggtagatt 393  Q
    ||||||| ||||  ||||| ||||||||| ||||||||||||||||||| | |||||||||||||||  |||||||||||||||||| ||||||||||||    
T  13855399 ttatagtgcatgtataaccagttgaccagtgtcagtacactaagataaattctcattgtcttcaacatgattcttctgtattctatatccatggtagatt 13855498  T
Q  394 tt 395  Q
    ||    
T  13855499 tt 13855500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 482
Target Start/End: Complemental strand, 10213432 - 10213346
Alignment:
Q  397 atcgtttagctcaatacagctcagctgttggaaggcgagttcttattc-acgcagtttcatgtatttgccttgatttgtaaccaagt 482  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||| || | ||||| ||||||||||  ||||| ||| |||||    
T  10213432 atcgtttagctcaatacagctcagcggttggaaggtgagttcttattcaacactgtttcgtgtatttgccaggatttttaatcaagt 10213346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 12105554 - 12105489
Alignment:
Q  397 atcgtttagctcaatacagctcagctgttggaaggcgagttcttattcacgcagtttcatgtattt 462  Q
    |||||||  ||||||| ||||||||| |||||||| |||||||||||||||| |||||||||||||    
T  12105554 atcgtttctctcaataaagctcagctcttggaaggtgagttcttattcacgctgtttcatgtattt 12105489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 395
Target Start/End: Complemental strand, 10211414 - 10211310
Alignment:
Q  292 tgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacagcattcttctgtattctatagccatggtag 390  Q
    ||||||||||  |||| || | |||||||| |||||||||||||||| |||||  || ||||||||||||  |||||| ||||| ||||||||||||| |    
T  10211414 tgtttatagtgtatgcatagcttgttgacctgcgtcagtacactaaggtaaagcctctttgtcttcaacaagattcttttgtatactatagccatggttg 10211315  T
Q  391 atttt 395  Q
    |||||    
T  10211314 atttt 10211310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 445
Target Start/End: Complemental strand, 9684178 - 9684130
Alignment:
Q  397 atcgtttagctcaatacagctcagctgttggaaggcgagttcttattca 445  Q
    ||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  9684178 atcgtttagctcaatacagctcatcggttggaaggtgagttcttattca 9684130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 12108142 - 12108062
Alignment:
Q  30 cgtaacagattcgtttgatagcgtgaggatttggaaacaaaa-tacaaatctgcatt--tgtgtcatttcaaagcagcatt 107  Q
    ||||||||||| |||| || | |||||||||| | ||||||| ||||||||||||||  || |||||||||||||||||||    
T  12108142 cgtaacagattggtttaatggtgtgaggatttaggaacaaaaatacaaatctgcattcatgagtcatttcaaagcagcatt 12108062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 447
Target Start/End: Complemental strand, 10211254 - 10211204
Alignment:
Q  397 atcgtttagctcaatacagctcagctgttggaaggcgagttcttattcacg 447  Q
    ||||||||||||||| ||||||| ||||| ||||| ||| |||||||||||    
T  10211254 atcgtttagctcaatgcagctcatctgttagaaggtgagctcttattcacg 10211204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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