View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_271 (Length: 280)
Name: NF11453A_low_271
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_271 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 6355927 - 6356200
Alignment:
| Q |
1 |
aatatcaaaggcaccaccaatgataccagtagggcttttagcagcagtgagggcgttgatatccaaagtattcttttgcatcaacaccacagttcccttc |
100 |
Q |
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| T |
6355927 |
aataccaaaggcaccaccaatgataccagtagggcttttagcagcagtgagggcgttgatatccaaagtattcttttgcatcaacaccacagttcccttc |
6356026 |
T |
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| Q |
101 |
aacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatttggtaaatgaaagaaaggcttg |
200 |
Q |
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| T |
6356027 |
aacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatatggtaaatgaaagaaaggcttg |
6356126 |
T |
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| Q |
201 |
tgtcttgtaaccataggggtggttagtatttatagtagttgatgagattaggatcacaatgttatagttcaaat |
274 |
Q |
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| T |
6356127 |
tgtcttgtaaccataggggtggttagtatttatagtagttgatgagattaggatcacaatgttatagttcaaat |
6356200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 7463037 - 7463269
Alignment:
| Q |
10 |
ggcaccaccaatgataccagtagggcttttagcagcagtgagggcgttgatatccaaagtattcttttgcatcaacaccacagttcccttcaacttttgg |
109 |
Q |
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| T |
7463037 |
ggcaccaccaatgatacctgtagggttattagttgcagttagggcatcaatgtccaacgcattcttttgcatcaacaccacagttcccttcaacttttgg |
7463136 |
T |
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| Q |
110 |
cctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgta |
209 |
Q |
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| T |
7463137 |
cctctatcaaagagaccagttacccctgaaaacatctttgaatatgctttaaatatattacactatatttggtaaatgaaagaaatgcctgtgtcttgta |
7463236 |
T |
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| Q |
210 |
accataggggtggttagtatttatagtagttga |
242 |
Q |
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| T |
7463237 |
accatgggggtgcttagtatctatagtagttga |
7463269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 6365430 - 6365599
Alignment:
| Q |
70 |
attcttttgcatcaacaccacagttcccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtatta |
169 |
Q |
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| T |
6365430 |
attcttttgcatcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaa---tgctt-aaatgtatta |
6365525 |
T |
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| Q |
170 |
cactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttgat |
243 |
Q |
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| T |
6365526 |
cactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgat |
6365599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 6373177 - 6373264
Alignment:
| Q |
158 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccatagggg-tggttagtatttatagtagttgatg |
244 |
Q |
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| T |
6373177 |
ttaaatgtattacactatctttgtcaaatgaaagaaatgtttgtgtcttgtaaccattggggatgcttactatttatagtacttgatg |
6373264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 6393093 - 6393179
Alignment:
| Q |
158 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttgatg |
244 |
Q |
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| T |
6393093 |
ttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccatggggatgcttggtatttatactacttgatg |
6393179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 6412233 - 6412320
Alignment:
| Q |
158 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccat-aggggtggttagtatttatagtagttgatg |
244 |
Q |
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| T |
6412233 |
ttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccttgtgggatgcttagtatttatagtacttgatg |
6412320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 6373611 - 6373685
Alignment:
| Q |
158 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttat |
233 |
Q |
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| T |
6373611 |
ttaaacgtattacaatatctttggctaatgaaagaaaagcttgtgtcttttaaccata-gggtggtttgtatttat |
6373685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 6426643 - 6426680
Alignment:
| Q |
70 |
attcttttgcatcaacaccacagttcccttcaactttt |
107 |
Q |
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| T |
6426643 |
attcttttgcatcaacaccacagttccctttaactttt |
6426680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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