View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_273 (Length: 280)
Name: NF11453A_low_273
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_273 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 38743276 - 38743545
Alignment:
| Q |
8 |
caatgcgaaatacattcaacagggacagtgtctacaatttgtaaatacaatataactgatctatacataagctatgcctcgaagatccagtctccccaaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38743276 |
caatgcgaaatacattcaacagggacagtgtctacaatttgtaaatacaatataactgatctatacataagttatgcctcgaagatccagtctccccaaa |
38743375 |
T |
|
| Q |
108 |
ccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacacta---tagtaactcttttccattaagat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
38743376 |
ccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagtagtaactcttttccatcaagat |
38743475 |
T |
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| Q |
205 |
cttctcgctagcgatttcccctacccaccaaccatcgttatcaaacacatcaactttctgattgagttca |
274 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38743476 |
cttctcgctagcaattttccctacccaccaaccatcgttatcaaacacgtcaactttctgattgagttca |
38743545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 80 - 274
Target Start/End: Complemental strand, 38789059 - 38788862
Alignment:
| Q |
80 |
tatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacac |
179 |
Q |
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| T |
38789059 |
tatgcctcaaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacac |
38788960 |
T |
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| Q |
180 |
tat---agtaactcttttccattaagatcttctcgctagcgatttcccctacccaccaaccatcgttatcaaacacatcaactttctgattgagttca |
274 |
Q |
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| T |
38788959 |
tatagtagtaactcttttccattaagatcttctcgctagcgatttcccctacccaccaaccatcgttatcaaacacatcaactttctgattgagttca |
38788862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 80 - 272
Target Start/End: Complemental strand, 38782887 - 38782692
Alignment:
| Q |
80 |
tatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacac |
179 |
Q |
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| T |
38782887 |
tatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacac |
38782788 |
T |
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| Q |
180 |
tatagt---aactcttttccattaagatcttctcgctagcgatttcccctacccaccaaccatcgttatcaaacacatcaactttctgattgagtt |
272 |
Q |
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| T |
38782787 |
tatagtagcaactcttttccatcaagatcttctcgctagcgattttacctacccaccaaccatcgttatcaaatacatcaactttttgattgagtt |
38782692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 38789199 - 38789140
Alignment:
| Q |
8 |
caatgcgaaatacattcaacagggacagtgtctacaatttgtaaatacaatataactgat |
67 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38789199 |
caattcgaaatacattcaacagggacaatgtctacaatttgtaaatacaatataactgat |
38789140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 38783015 - 38782958
Alignment:
| Q |
15 |
aaatacattcaacagggacagtgtctacaatttgtaaatacaatataactgatctata |
72 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||| ||| | ||||||| |
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| T |
38783015 |
aaatacattcaatagtgacagtgtctacaatttgtaaatacaatgtaattaatctata |
38782958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 80 - 272
Target Start/End: Original strand, 30962765 - 30962959
Alignment:
| Q |
80 |
tatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacac |
179 |
Q |
| |
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|||||||| |||||||| |||||||||| ||| | ||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
30962765 |
tatgcctccaagatccactctccccaaaacaacttttgatgaaccctaatttgatcaca-gggtagtaaatagtttgatgggtgtagtcaaaatacacac |
30962863 |
T |
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| Q |
180 |
tatagta---actcttttccattaagatcttctcgctagcgatttcccctacccaccaaccatcgttatcaaacacatcaactttctgattgagtt |
272 |
Q |
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| T |
30962864 |
tatagtagtaattgttttccatgaggatcttctcgctagcaattttccctacccaccaaccatctttataaaaaacatcaactttttgattgagtt |
30962959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 30897576 - 30897506
Alignment:
| Q |
202 |
gatcttctcgctagcgatttcccctacccaccaaccatcgttatcaaacacatcaactttctgattgagtt |
272 |
Q |
| |
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||||||||| || | ||||| |||||||||||||||||| |||| || ||||||||||||||||||||| |
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| T |
30897576 |
gatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagtt |
30897506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 5963481 - 5963551
Alignment:
| Q |
202 |
gatcttctcgctagcgatttcccctacccaccaaccatcgttatcaaacacatcaactttctgattgagtt |
272 |
Q |
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||||||||| |||| ||||| ||||| ||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
5963481 |
gatcttctcactagtgatttgccctaaccaccaaccatcgttgtcaaaagcatcaactttttgattgagtt |
5963551 |
T |
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