View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_274 (Length: 280)
Name: NF11453A_low_274
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_274 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 29204430 - 29204166
Alignment:
| Q |
10 |
ataatactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204430 |
ataatactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtt |
29204331 |
T |
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| Q |
110 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204330 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
29204231 |
T |
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| Q |
210 |
aacgcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaa |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204230 |
aacgcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaa |
29204166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 12647446 - 12647710
Alignment:
| Q |
10 |
ataatactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtt |
109 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12647446 |
ataatactagttttattttacaacttcaggaatggatacatgctttttgtatgcactgtttaataacatagtttgctaaatcaatctctctagctttgtt |
12647545 |
T |
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| Q |
110 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647546 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
12647645 |
T |
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| Q |
210 |
aacgcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaa |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647646 |
aacgcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaa |
12647710 |
T |
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