View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_276 (Length: 279)
Name: NF11453A_low_276
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_276 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 58 - 267
Target Start/End: Complemental strand, 43103398 - 43103191
Alignment:
| Q |
58 |
tcaagggttgatgattatgcagacaaaattgattatcttagatataattctgttatggaattctctaatgggttctcttcttcacctaagcaaaaatctc |
157 |
Q |
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| T |
43103398 |
tcaagggttgatgattatgcagacaaaattgattatcgaagatataattctgttatggaattctctaatgggttctcttattcacctaagcaaaaatctc |
43103299 |
T |
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| Q |
158 |
gttctgttgtaattggctcaaaggaacttgttgtgacatgagttta-nnnnnnnnnnnnnnaaaagatcttttgacgtgagttataaagtatcatgtcca |
256 |
Q |
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| T |
43103298 |
gttctgttgtaattggctcaaaggaac---ttgtgacatgagtttattttttatttttttttaaagatcttgtgacgtgacttataaagtatcatgtcca |
43103202 |
T |
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| Q |
257 |
aatcgtatatt |
267 |
Q |
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| T |
43103201 |
aatcgtatatt |
43103191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 43103490 - 43103432
Alignment:
| Q |
6 |
aaaggaaaaggaaaagtagaaggaaacatgaatgtctttcattaggagctgctcaaggg |
64 |
Q |
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| T |
43103490 |
aaaggaaaaggaaaagtagaaggaaacatgaatgtctttcattaggagctgctcaaggg |
43103432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 40001495 - 40001398
Alignment:
| Q |
58 |
tcaagggttgatgattatgcagacaaaattgattatcttagatataattctgttatggaattctctaatgggttctcttcttcacctaagcaaaaatc |
155 |
Q |
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| T |
40001495 |
tcaagagttgatgattatggagagaaaattgattatcgaagatataattctgttacagaattctctaatgtattctcttcttcgcccaagaaaaaatc |
40001398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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