View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_279 (Length: 277)
Name: NF11453A_low_279
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_279 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 21642680 - 21642420
Alignment:
| Q |
11 |
catagaatgaaaacatctcccaaggtttacgtcattcaacgtagaacaagctttaataacggaagatagagtaaaagcattgggttgaataggaaatgcc |
110 |
Q |
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| T |
21642680 |
catagaatgaaagcatctcccaaggtttacgtcatttaacgcagaacaagctttgataacagaagatagagtaaaagcattgggttgaacaggaaatgcc |
21642581 |
T |
|
| Q |
111 |
aacatttcgtagaataaagacatcgactgatgtggctggccggagcgagtgtaaccggagataagtgaagtccatgagataacatctttgacgtgaagtg |
210 |
Q |
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|||||||||||||||||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21642580 |
aacatttcgtagaataaagatatcgattgatgtggcaggtcggagcgagtgtaaccggagataagtgaagtccatgagatgacatctttgacgtgaagtg |
21642481 |
T |
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| Q |
211 |
agtcgaagagatgacgggcgtgagataaatgggggccggggtttaatttaaagtaaagagt |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21642480 |
agtcgaagagatgacgggcgtgagataaatgggggccggggtttaatttaaagtaaagagt |
21642420 |
T |
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