View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_280 (Length: 277)
Name: NF11453A_low_280
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_280 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 6976690 - 6976585
Alignment:
| Q |
1 |
tcagacacgatattgacattgataggactaatgatacataacacctcacctccttttcattgccataatattgagcacaatctatatgacgatatccaac |
100 |
Q |
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| T |
6976690 |
tcagacacgatattgacattgataggactaatgatacataacacctcacctccttttcattgccataatattgagcacaatctatatgacgatatccaac |
6976591 |
T |
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| Q |
101 |
ctacat |
106 |
Q |
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|||||| |
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| T |
6976590 |
ctacat |
6976585 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 6957183 - 6957129
Alignment:
| Q |
48 |
acctccttttcattgccataatattgagcacaatctatatgacgatatccaacct |
102 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
6957183 |
acctccttttcattgccataaatttgagcacaatctatatgacgataaccaacct |
6957129 |
T |
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