View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_284 (Length: 275)
Name: NF11453A_low_284
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_284 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 45363020 - 45362765
Alignment:
| Q |
17 |
acaatatggaaatagacttttctatgataacaggcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtt |
116 |
Q |
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| T |
45363020 |
acaatatggaaatagactttgctatgataacaggcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtt |
45362921 |
T |
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| Q |
117 |
tgggtttctgataagttttctccaaaccattatcaatatcagcctcgtcattatacttgctggtggcatcgtttttgctccaccttcctcccctctcttg |
216 |
Q |
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| T |
45362920 |
tgggtttctgataagttttctccaaaccattatcaatatcagcctcgtcattatacttgctggtggcatcgtttttgccccaccttcctcccctctcttg |
45362821 |
T |
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| Q |
217 |
tgctcatcctcaccctccactgacaataataatatatactcataatcatgtcaaccaat |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45362820 |
tgctcatcctcaccctccactgacaataataatatata---ataatcatgtcaaccaat |
45362765 |
T |
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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 25040338 - 25040218
Alignment:
| Q |
65 |
acctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattatcaatatcagcctcgt |
164 |
Q |
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|||||||||||| | |||||||| || || || | ||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| || |
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| T |
25040338 |
acctgaatgaaaccaaagaccaagtgagaccaattaagctagaataagtgtttggatttctgataagttttctccaaaccataatcaatataagccttgt |
25040239 |
T |
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| Q |
165 |
cattatacttgctggtggcat |
185 |
Q |
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||| | ||| ||||||||||| |
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| T |
25040238 |
catcacactagctggtggcat |
25040218 |
T |
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