View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_285 (Length: 275)

Name: NF11453A_low_285
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_285
NF11453A_low_285
[»] chr7 (10 HSPs)
chr7 (25-260)||(1595498-1595733)
chr7 (25-260)||(1541953-1542188)
chr7 (50-158)||(1105427-1105535)
chr7 (46-260)||(1557897-1558105)
chr7 (46-159)||(1603846-1603962)
chr7 (37-131)||(3956074-3956168)
chr7 (198-260)||(1604001-1604063)
chr7 (50-99)||(1551375-1551424)
chr7 (46-147)||(2329174-2329275)
chr7 (46-147)||(2337073-2337174)
[»] chr8 (6 HSPs)
chr8 (50-260)||(18749649-18749853)
chr8 (50-260)||(18723997-18724201)
chr8 (46-158)||(18739865-18739977)
chr8 (46-158)||(18744829-18744941)
chr8 (202-255)||(18739729-18739782)
chr8 (202-255)||(18744693-18744746)
[»] scaffold0491 (3 HSPs)
scaffold0491 (50-260)||(6490-6694)
scaffold0491 (46-158)||(1744-1856)
scaffold0491 (202-255)||(1608-1661)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 1595498 - 1595733
Alignment:
Q  25 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1595498 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgtctattatgtggacatttcatacaa 1595597  T
Q  125 ttgtttggagggtccccttccaagttgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcacca 224  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| | ||||||  ||||||||||||    
T  1595598 ttgtttggagggtccctttccaagttgtcttcagcttaacacaacaacaagggaaaattctgatgtatgttcatttagcaaattccagccttggtcacca 1595697  T
Q  225 cacaagaaaaataataaattaaagcacattgatgtc 260  Q
    ||||||||||||||||||||||||||||||| ||||    
T  1595698 cacaagaaaaataataaattaaagcacattgttgtc 1595733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 1542188 - 1541953
Alignment:
Q  25 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaa 124  Q
    |||||| |||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  1542188 atattgactacatttacaaccttaatttaagcaataataatctcactggaacaattccccaatctctctgtgatgtcaattatgtggacatttcatacaa 1542089  T
Q  125 ttgtttggagggtccccttccaagttgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcacca 224  Q
    |||||||||||||||| |||||| ||||| |   ||| | |||||||  || ||||| ||||||| |||| | |||||||||||||  ||||||||||||    
T  1542088 ttgtttggagggtcccattccaaattgtcctggtctttatacaacaaacagcgaaaactatgatgtatgtccatttaaccaattccagccttggtcacca 1541989  T
Q  225 cacaagaaaaataataaattaaagcacattgatgtc 260  Q
    ||||||||||||||||||||||||||||||| ||||    
T  1541988 cacaagaaaaataataaattaaagcacattgttgtc 1541953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 1105427 - 1105535
Alignment:
Q  50 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 149  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |    
T  1105427 tttaagcaataataatctcactggaacaattccccaatctctctgtaatgtcgattatgtggacatttcatacaattgtttggagggtcccattccaaat 1105526  T
Q  150 tgtcttcag 158  Q
    |||||||||    
T  1105527 tgtcttcag 1105535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 46 - 260
Target Start/End: Complemental strand, 1558105 - 1557897
Alignment:
Q  46 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcct------attatgtggacatttcatacaattgtttggagggtcc 139  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||   |      |||||||||||||||||||||||||||||||||||||    
T  1558105 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatttattcaattattatgtggacatttcatacaattgtttggagggtcc 1558006  T
Q  140 ccttccaagttgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataat 239  Q
    | |||||| ||||||| | | ||             |||||||| ||||| |||||| |||||| ||||||  |||||||||||||||||||||||||||    
T  1558005 cattccaaattgtcttgatcatat------------ggaaaattctgatgtatgttcatttaacaaattccagccttggtcaccacacaagaaaaataat 1557918  T
Q  240 aaattaaagcacattgatgtc 260  Q
    |||||||||||||||| ||||    
T  1557917 aaattaaagcacattgttgtc 1557897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 1603846 - 1603962
Alignment:
Q  46 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcc---tattatgtggacatttcatacaattgtttggagggtcccct 142  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||  |   |||||||||||||||||||||||||||||||||| |||| |    
T  1603846 ttaatttaagcaataataatctctctggaacaattccccaatctctctgtaatttctattattatgtggacatttcatacaattgtttggaggatcccat 1603945  T
Q  143 tccaagttgtcttcagc 159  Q
    ||||| |||||||||||    
T  1603946 tccaaattgtcttcagc 1603962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 3956168 - 3956074
Alignment:
Q  37 tttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttg 131  Q
    |||||| | |||||||||| ||||||||||||| ||| || || |||||||||||||||||||  | |||| |||||||||| ||||||||||||    
T  3956168 tttacaaacttaatttaagtaataataatctcagtggaacgataccccaatctctctgtaatgttttttatctggacatttcttacaattgtttg 3956074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 1604001 - 1604063
Alignment:
Q  198 tttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattgatgtc 260  Q
    |||||||||||||  |||||| ||  ||||||||||||||| |||||||||||||||| ||||    
T  1604001 tttaaccaattccatccttggccaatacacaagaaaaataaaaaattaaagcacattgttgtc 1604063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 1551424 - 1551375
Alignment:
Q  50 tttaagcaataataatctcactggcacaattccccaatctctctgtaatg 99  Q
    ||||||| |||||||||||||||| ||||||||||| ||| | |||||||    
T  1551424 tttaagccataataatctcactggaacaattccccattctatttgtaatg 1551375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 2329174 - 2329275
Alignment:
Q  46 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 145  Q
    |||||||||| ||||||||||| || ||     ||||||||||||| ||||||| | |||||||||||||||| | ||||  |||  ||||||| |||||    
T  2329174 ttaatttaaggaataataatcttacaggagtgtttccccaatctctttgtaatgtcaattatgtggacatttccttcaatcatttaaagggtcctcttcc 2329273  T
Q  146 aa 147  Q
    ||    
T  2329274 aa 2329275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 2337073 - 2337174
Alignment:
Q  46 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 145  Q
    |||||||||| ||||||||||| || ||     ||||||||||||| ||||||| | |||||||||||||||| | ||||  |||  ||||||| |||||    
T  2337073 ttaatttaaggaataataatcttacaggagtgtttccccaatctctttgtaatgtcaattatgtggacatttccttcaatcatttaaagggtcctcttcc 2337172  T
Q  146 aa 147  Q
    ||    
T  2337173 aa 2337174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 50 - 260
Target Start/End: Complemental strand, 18749853 - 18749649
Alignment:
Q  50 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 149  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||| |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  18749853 tttaagaaataataatctcactggaacaattccccaatctctctgcaatgtcatttatgtggacatttcatacaattgtttgaagggtcccattccaatt 18749754  T
Q  150 tgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagc 249  Q
    |||||||||      ||||| |  | |||||||| ||||  |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  18749753 tgtcttcag------acaacgaagatggaaaattctgatatatgttcatttaaccagttccaaccttggtcaccacacaagaaaaataataaattaaagc 18749660  T
Q  250 acattgatgtc 260  Q
    |||||| ||||    
T  18749659 acattgttgtc 18749649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 50 - 260
Target Start/End: Complemental strand, 18724201 - 18723997
Alignment:
Q  50 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 149  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| | |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  18724201 tttaagaaataataatctcactggaacaattccccaatctctctgtaaagtcatttatgtggacatttcatacaattgtttgaagggtcccattccaaat 18724102  T
Q  150 tgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagc 249  Q
    |||||||      | ||||| |  |  ||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  18724101 tgtcttc------atacaacgaagatcgaaaattctgatgtatgttcatttaaccagttccaaccttggtcaccacacaagaaaaataataaattaaagc 18724008  T
Q  250 acattgatgtc 260  Q
    |||||| ||||    
T  18724007 acattgttgtc 18723997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 18739977 - 18739865
Alignment:
Q  46 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 145  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  18739977 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 18739878  T
Q  146 aagttgtcttcag 158  Q
    || ||||||||||    
T  18739877 aaattgtcttcag 18739865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 18744941 - 18744829
Alignment:
Q  46 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 145  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  18744941 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 18744842  T
Q  146 aagttgtcttcag 158  Q
    || ||||||||||    
T  18744841 aaattgtcttcag 18744829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 18739782 - 18739729
Alignment:
Q  202 accaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattg 255  Q
    |||||||||  |||||| || |||||||||||||||| ||||||||||||||||    
T  18739782 accaattccatccttggccaacacacaagaaaaataaaaaattaaagcacattg 18739729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 18744746 - 18744693
Alignment:
Q  202 accaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattg 255  Q
    |||||||||  |||||| || |||||||||||||||| ||||||||||||||||    
T  18744746 accaattccatccttggccaacacacaagaaaaataaaaaattaaagcacattg 18744693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 50 - 260
Target Start/End: Complemental strand, 6694 - 6490
Alignment:
Q  50 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 149  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| | |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  6694 tttaagaaataataatctcactggaacaattccccaatctctctgtaaagtcatttatgtggacatttcatacaattgtttgaagggtcccattccaaat 6595  T
Q  150 tgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagc 249  Q
    |||||||      | ||||| |  |  ||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  6594 tgtcttc------atacaacgaagatcgaaaattctgatgtatgttcatttaaccagttccaaccttggtcaccacacaagaaaaataataaattaaagc 6501  T
Q  250 acattgatgtc 260  Q
    |||||| ||||    
T  6500 acattgttgtc 6490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 1856 - 1744
Alignment:
Q  46 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 145  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  1856 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 1757  T
Q  146 aagttgtcttcag 158  Q
    || ||||||||||    
T  1756 aaattgtcttcag 1744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 1661 - 1608
Alignment:
Q  202 accaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattg 255  Q
    |||||||||  |||||| || |||||||||||||||| ||||||||||||||||    
T  1661 accaattccatccttggccaacacacaagaaaaataaaaaattaaagcacattg 1608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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