View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_286 (Length: 275)
Name: NF11453A_low_286
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_286 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 71 - 275
Target Start/End: Original strand, 22291917 - 22292121
Alignment:
| Q |
71 |
gaaactgagaatgaaaccgaatggttttcattcatttggctttgatgtgaagggtgaggcttctggtgaattcttgaggtcaaatacaacaacaaaatta |
170 |
Q |
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| T |
22291917 |
gaaactgagaatgaaaccgaatggttttcattcatttggctttgatgtgaagggtgaggcttctggtgaattcttgaagtcaaatacaacaacaaaatta |
22292016 |
T |
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| Q |
171 |
gtggatccgattcaatcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctaattgcaaatttacataattaatgaatggaa |
270 |
Q |
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| T |
22292017 |
gtggatccgattcaatcaactattaccctgttctcatcagagccccaaatgtgattgtgttgtgaatctaattgcaaatttacaaaattaatgaatgcaa |
22292116 |
T |
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| Q |
271 |
ttgaa |
275 |
Q |
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||||| |
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| T |
22292117 |
ttgaa |
22292121 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 22291877 - 22291918
Alignment:
| Q |
15 |
atataaacttggaaataatgaaagttgagaaataagagaaga |
56 |
Q |
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| T |
22291877 |
atataaacttggaaataatgaaaggtgagaaataagagaaga |
22291918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 53559297 - 53559393
Alignment:
| Q |
50 |
gagaagatgaaagtgaggggtgaaactgagaatgaaaccgaatggttttcattcatttggctttgatgtgaagggtgaggcttctggtgaattcttg |
146 |
Q |
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| T |
53559297 |
gagaagatgaaagtgaggggtgaaactgagattgaaaccgaatggttttcattcatttggctttgatgtgaggggtcaggcttctggtgaattcttg |
53559393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 17682554 - 17682488
Alignment:
| Q |
186 |
tcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctaattgcaaattta |
252 |
Q |
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| T |
17682554 |
tcaactatgaccctattctcgtcagagacccaaatctgactgtgttgtgaacctaattgcaaattta |
17682488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 80
Target Start/End: Complemental strand, 17682599 - 17682568
Alignment:
| Q |
49 |
agagaagatgaaagtgaggggtgaaactgaga |
80 |
Q |
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| T |
17682599 |
agagaagatgaaagtgaggggtgaaactgaga |
17682568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 180 - 275
Target Start/End: Original strand, 15434052 - 15434147
Alignment:
| Q |
180 |
attcaatcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctaattgcaaatttacataattaatgaatggaattgaa |
275 |
Q |
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| T |
15434052 |
attcaatcaactattagcctgttctcatcagagacccaaatctgattctgttgtgaatctaattgcaaatttacaaaattaatgaatggaattgaa |
15434147 |
T |
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