View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_291 (Length: 273)
Name: NF11453A_low_291
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_291 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 44 - 267
Target Start/End: Complemental strand, 43791291 - 43791068
Alignment:
| Q |
44 |
tccagatgaagtggtttgaacaataatgtagacaattttcttgaacagtgatccagacgctagattttgcttcctgatgatgtggttagcttgatggact |
143 |
Q |
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| T |
43791291 |
tccagatgaagtggtttgaacaatattgtagacaattttcttgaacagtgatccagacgctagattttgcttcctgatgatgtggttagcttgatggact |
43791192 |
T |
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| Q |
144 |
taagaagaacatccatagttaatgcttctttactcatttggcttctctttattgttcaccggacataagtgattatacgatttaatcaaagtttttcctt |
243 |
Q |
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| T |
43791191 |
taagaagaacatccatagttaatgcttctttactcatttggcttctctttattgttcaccggacataagtgattatacgatttaatcaaagtttttcctt |
43791092 |
T |
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| Q |
244 |
gttcatattaattaatgttataaa |
267 |
Q |
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| T |
43791091 |
gttcatattaattaatgttataaa |
43791068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 43791329 - 43791300
Alignment:
| Q |
20 |
tggatgaaatattgtagagattgatccaga |
49 |
Q |
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| T |
43791329 |
tggatgaaatattgtagagattgatccaga |
43791300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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