View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_297 (Length: 271)
Name: NF11453A_low_297
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_297 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 39920026 - 39919766
Alignment:
| Q |
9 |
gagatgaatgcggaggtttatacagagttttgtgagatttggcatgggcttagtgtgtggtgtgaagtttcaaatctgcggcaactnnnnnnntcgcgtc |
108 |
Q |
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| T |
39920026 |
gagatgaatgcggaggtttatacagagttttgtgagatttggcatgggcttagtgtgtggtgtgaagtttcaaatccgcggcaactaaaaaaatcgcgtc |
39919927 |
T |
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| Q |
109 |
gcaatgcactttttggtcatggaacaagaagcagagaatttgcttcactccagacatgcattaactccttcccaccactaaccaaacagacacttaatgt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39919926 |
gcaatgcactttttggtcatggaacaagaagcagagaatttgcttcactccagacatgcgttaactccttcccaccactaaccaaacagacacttaatgt |
39919827 |
T |
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| Q |
209 |
ggccaacttgaggagttttccgaaggtagaacctaactctcaaaatccatcgattattattat |
271 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39919826 |
ggccaacttgaggagttttccgaaggtagaacctaa--ctcaaaatccatcgattattattat |
39919766 |
T |
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