View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_298 (Length: 271)
Name: NF11453A_low_298
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_298 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 40820000 - 40820236
Alignment:
| Q |
23 |
ctaaaaagatatatataacatgagatttgttaggtttaaaactatataacaattatataacttgatcaagcatttttcatgaaataccaagagttcttac |
122 |
Q |
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| T |
40820000 |
ctaaaaagatatatataacatgagatttgttaggtttaaaactatataacaattatataacttcatcaagcatttttcatgaaataccaagaattcttac |
40820099 |
T |
|
| Q |
123 |
cagctttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctttctt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40820100 |
cagctttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttctt |
40820199 |
T |
|
| Q |
223 |
cacatttgctttgtcacagcaaggagctcttcccatt |
259 |
Q |
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| T |
40820200 |
cacatttgctttgtcacagcaaggagctcttcccatt |
40820236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 258
Target Start/End: Complemental strand, 21173641 - 21173502
Alignment:
| Q |
119 |
ttaccagctttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctt |
218 |
Q |
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| T |
21173641 |
ttaccagctttatgaggaagagaaatccaatttccaccagtgccatgtttctctatgtaatctttaagctttgaatcttcttctggtgaccatggacctc |
21173542 |
T |
|
| Q |
219 |
tcttcacatttgctttgtcacagcaaggagctcttcccat |
258 |
Q |
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| T |
21173541 |
tcttaacacttgttttgtcacaacatggagctcttcccat |
21173502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 258
Target Start/End: Complemental strand, 53557133 - 53557002
Alignment:
| Q |
127 |
tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctttcttcaca |
226 |
Q |
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|||||||||||||| |||||||||||| |||||||||| |||| || || |||||| | | ||||||||| || ||||| |||||||||||||| |
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| T |
53557133 |
tttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacg |
53557034 |
T |
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| Q |
227 |
tttgctttgtcacagcaaggagctcttcccat |
258 |
Q |
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|| || ||||||||||| |||||||| ||||| |
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| T |
53557033 |
ttagccttgtcacagcatggagctctacccat |
53557002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 40254617 - 40254681
Alignment:
| Q |
194 |
tcttcttctggtgaccagggtcctttcttcacatttgctttgtcacagcaaggagctcttcccat |
258 |
Q |
| |
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|||||||| |||||||| || ||| |||| ||||| ||||||||||| ||||||||||| ||||| |
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| T |
40254617 |
tcttcttcaggtgaccatggacctctcttgacattggctttgtcacaacaaggagctctccccat |
40254681 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 41208793 - 41208915
Alignment:
| Q |
137 |
agagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctttcttcacatttgctttgt |
236 |
Q |
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|||| |||||| ||||| ||||||||||| || ||||| || || || || |||| ||||||||| || ||||| || |||||||| ||||| ||||||| |
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| T |
41208793 |
agagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttctttacattagctttgt |
41208892 |
T |
|
| Q |
237 |
cacagcaaggagctcttcccatt |
259 |
Q |
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|||||||||||| |||||||||| |
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| T |
41208893 |
cacagcaaggagatcttcccatt |
41208915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 47847051 - 47847116
Alignment:
| Q |
193 |
atcttcttctggtgaccagggtcctttcttcacatttgctttgtcacagcaaggagctcttcccat |
258 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||||| |
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| T |
47847051 |
atcttcttctggtgaccaaggtcctttcttcacgtttgctttgtcacagcaaggtgcccttcccat |
47847116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 5113295 - 5113168
Alignment:
| Q |
131 |
tgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctttcttcacatttg |
230 |
Q |
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||||| |||| |||||||||||||||||| |||| | |||||| || ||||| || | ||||||||| |||||||| || ||||| || ||||| | |
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| T |
5113295 |
tgaggtagagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattgg |
5113196 |
T |
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| Q |
231 |
ctttgtcacagcaaggagctcttcccat |
258 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
5113195 |
ctttgtcacagcaaggagctcttcccat |
5113168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 258
Target Start/End: Complemental strand, 4685481 - 4685350
Alignment:
| Q |
127 |
tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccagggtcctttcttcaca |
226 |
Q |
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|||||| || |||| |||||| || |||||||| ||||| | |||||| || |||||| || | |||||||||||| ||||| || ||||||||||| |
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| T |
4685481 |
tttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctttcttcacg |
4685382 |
T |
|
| Q |
227 |
tttgctttgtcacagcaaggagctcttcccat |
258 |
Q |
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|||||||||||||| ||||||||||| ||||| |
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| T |
4685381 |
tttgctttgtcacaacaaggagctctacccat |
4685350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 4612023 - 4612088
Alignment:
| Q |
193 |
atcttcttctggtgaccagggtcctttcttcacatttgctttgtcacagcaaggagctcttcccat |
258 |
Q |
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|||||| || || ||||| |||||| |||| || ||| |||||||||| ||||||||||||||||| |
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| T |
4612023 |
atcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctcttcccat |
4612088 |
T |
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