View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_30 (Length: 460)
Name: NF11453A_low_30
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 451
Target Start/End: Complemental strand, 40644663 - 40644216
Alignment:
| Q |
7 |
gttgagtccgatttttccacatagtttctgatagatca---agctgcatcattcatgcaggcgtgccagacgaaattataaaaagagcagcagttgtgtt |
103 |
Q |
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| T |
40644663 |
gttgagtccgatttttccacatagtttctgatagatcatcaagctgcatcatttatgcaggcgtgccagacgaaattataaaaagagcagcagttgtgtt |
40644564 |
T |
|
| Q |
104 |
ggacgctgtttcaaaaaacaattgtgttgagaggttatgcaatgagaacatctcagctcaagatgatgaatacaaggtatcatttcagtttcaaaagtca |
203 |
Q |
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| T |
40644563 |
ggacgctgtttcaaaaaacaattgtgttgagaggttatgcaatgagaacatctcagctcaagatgatgaatacaaggtatcatttcagtttcaaaagtca |
40644464 |
T |
|
| Q |
204 |
aattaaagatacttgttacattttggatatcatttactcacatgtacatgcttcatgcaggacgctatggagaaattgttgaaattcgatgttgacaatg |
303 |
Q |
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| T |
40644463 |
aattaaagatacttgttacattttggatatcatttactcacatacacatgtttcatgcaggacgctatggagaaattgttgaaattcgatgttgacaatg |
40644364 |
T |
|
| Q |
304 |
gtgacttgaaccnnnnnnncgaggatatattctgcagttcctgatacatcataagttcataaccaaggcatttgcttatagttttcaacaaggagtgaat |
403 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40644363 |
gtgacttgaacctttttttcgaggatatattctgcaattcctgatacatcataagttcataaccaaggcatttgcttatagttttcaacaaggagtgtat |
40644264 |
T |
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| Q |
404 |
atatatgctttccttattgacttttttatttcctctgtctatattgtt |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40644263 |
atatatgctttccttattgacttttttatttcctctgtctattttgtt |
40644216 |
T |
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