View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_300 (Length: 269)

Name: NF11453A_low_300
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_300
NF11453A_low_300
[»] chr5 (7 HSPs)
chr5 (1-264)||(29013081-29013345)
chr5 (1-219)||(29365815-29366033)
chr5 (91-250)||(24085110-24085269)
chr5 (169-264)||(29014953-29015048)
chr5 (179-235)||(11095406-11095462)
chr5 (186-236)||(10391444-10391494)
chr5 (193-233)||(34117473-34117513)
[»] chr6 (1 HSPs)
chr6 (182-236)||(10016725-10016779)
[»] chr4 (2 HSPs)
chr4 (187-238)||(24193632-24193683)
chr4 (183-236)||(28615436-28615489)
[»] chr2 (3 HSPs)
chr2 (186-236)||(41809163-41809213)
chr2 (187-235)||(787435-787483)
chr2 (180-236)||(6547991-6548047)
[»] chr7 (1 HSPs)
chr7 (183-236)||(529464-529517)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 29013345 - 29013081
Alignment:
Q  1 accaaatgctcactcagttattgtaaattgttggttcataactttcatatagattatggaaaaa-tgtttctttttgtagcttgnnnnnnngtttctctt 99  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       |||||||||    
T  29013345 accaaattctcactcaggtattgtaaattgttggttcataactttcatatagattatggaaaaaatgtttctttttgtagcttgtttttttgtttctctt 29013246  T
Q  100 acgtgagtgaggtttttattcaatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattgga 199  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29013245 acgtgagtgaggtttttattcaatatgctctattgggttcaattatttagtggaaaagttgaaaactttgatttaaagtttaaggtctgtttggattgga 29013146  T
Q  200 ttattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaatacaaacaccaaac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29013145 ttattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaacacaaacaccaaac 29013081  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 29366033 - 29365815
Alignment:
Q  1 accaaatgctcactcagttattgtaaattgttggttcataactttcatatagattatgg-aaaaatgtttctttttgtagcttgnnnnnnngtttctctt 99  Q
    ||||||| |||| |||| ||||||||||  ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||       ||||||||     
T  29366033 accaaattctcattcaggtattgtaaatgtttgattcataaccttcatatagattatgggaaaaatgtttctttttgtagcttgtttttttgtttctctc 29365934  T
Q  100 acgtgagtgaggtttttattcaatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtttggattgga 199  Q
    | |||||||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||    
T  29365933 atgtgagtgaagtttttattcaatatgctctattgggttcaactatttagtggaaaaattgaaaactttgattg-aagtttaaggtccatttggattgga 29365835  T
Q  200 ttattgaagcttatctgctg 219  Q
    ||||||| ||||||||||||    
T  29365834 ttattgaggcttatctgctg 29365815  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 24085269 - 24085110
Alignment:
Q  91 gtttctcttacgtgagtgaggtttttattcaatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtt 190  Q
    |||||||||| |||| ||||||||| ||||| | |  | |||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||    
T  24085269 gtttctcttatgtgactgaggttttaattcagtttactatattgggttcaattattttgtagaaaagttgaaaacgtggattgaaagtttaaggtctgtt 24085170  T
Q  191 tggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaa 250  Q
    ||||||||||||| |||||||| |  ||| |||||||||||||||||| ||||| |||||    
T  24085169 tggattggattatagaagcttaccgactgacataaacacttgtgagttttgaagcacgaa 24085110  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 29015048 - 29014953
Alignment:
Q  169 gattgaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaatacaaacaccaaac 264  Q
    |||||||||||||||| | |||||||||||||||| |||||||| | |||| ||||||||||| |||||| ||||| |||||  || |||||||||    
T  29015048 gattgaaagtttaaggcccgtttggattggattatagaagcttaccggctgacataaacacttctgagttctgaagcacgaacccagacaccaaac 29014953  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 11095406 - 11095462
Alignment:
Q  179 ttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtga 235  Q
    |||||||||||||||| ||| ||||| |||||||||| ||| |||||||||||||||    
T  11095406 ttaaggtctgtttggactggtttatttaagcttatctactgacataaacacttgtga 11095462  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 10391494 - 10391444
Alignment:
Q  186 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 236  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  10391494 ctgtttcgattggcttatttaagcttatctgctggcataatcacttgtgag 10391444  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 34117473 - 34117513
Alignment:
Q  193 gattggattattgaagcttatctgctggcataaacacttgt 233  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  34117473 gattggcttattggagcttatctactggcataaacacttgt 34117513  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 10016779 - 10016725
Alignment:
Q  182 aggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 236  Q
    ||||||||||||||||| |||||  ||||||||| | ||||||||||||||||||    
T  10016779 aggtctgtttggattggtttatttgagcttatctacaggcataaacacttgtgag 10016725  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 24193683 - 24193632
Alignment:
Q  187 tgtttggattggattattgaagcttatctgctggcataaacacttgtgagtt 238  Q
    |||||||||||  |||||  ||||||||| ||||||||||||||||||||||    
T  24193683 tgtttggattgacttatttgagcttatctcctggcataaacacttgtgagtt 24193632  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 28615489 - 28615436
Alignment:
Q  183 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 236  Q
    |||||||||||||||  ||||| ||| |||||| || |||||||||||||||||    
T  28615489 ggtctgtttggattgacttatttaagtttatctactagcataaacacttgtgag 28615436  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 41809163 - 41809213
Alignment:
Q  186 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 236  Q
    ||||||||||||| || || |||||||| || |||||||||||||||||||    
T  41809163 ctgtttggattggttttttaaagcttatttgttggcataaacacttgtgag 41809213  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 787483 - 787435
Alignment:
Q  187 tgtttggattggattattgaagcttatctgctggcataaacacttgtga 235  Q
    ||||||||||||||||||  ||| ||||| ||||||||| |||||||||    
T  787483 tgtttggattggattattcgagcatatctactggcataagcacttgtga 787435  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 6548047 - 6547991
Alignment:
Q  180 taaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 236  Q
    ||||||||||||||||||  ||||| |||||||||| || ||||||  |||||||||    
T  6548047 taaggtctgtttggattgacttattcaagcttatctactagcataagaacttgtgag 6547991  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 529517 - 529464
Alignment:
Q  183 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 236  Q
    |||||| ||||||||  |||||  ||||||||| ||||||||||||||||||||    
T  529517 ggtctgattggattgacttatttgagcttatctactggcataaacacttgtgag 529464  T

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