View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_303 (Length: 269)
Name: NF11453A_low_303
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_303 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 28519269 - 28519039
Alignment:
| Q |
39 |
aacctgtgtccaaaagagcaacaactatgtcgcgttctaatttcaatcttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtg |
138 |
Q |
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| T |
28519269 |
aacctgtgtccaaaagagcaacaactatgtcgcgttctaatttcaatcttctcttggcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtg |
28519170 |
T |
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| Q |
139 |
tagcttacggtattgatttttaaacaccaaaagtacttcatccatggctacacatgcnnnnnnnnnnnnnnnnnnnnnnncaatatctacaaattttaag |
238 |
Q |
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| T |
28519169 |
taacttacggtattgatttttaaacaccaaaagtacttcatccatggctacacatacaaaaaaatattcgaagaaaaaaacaatatctacaaattttaag |
28519070 |
T |
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| Q |
239 |
ctagagaaaaaattatacacaccagataact |
269 |
Q |
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| T |
28519069 |
ctagagaaaaaattatacacaccagataact |
28519039 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 12728763 - 12728832
Alignment:
| Q |
87 |
ttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtagcttacggtattgatt |
156 |
Q |
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| T |
12728763 |
ttctcttagctgtcaatggtaatccaataaagtcccatgatcttgttgtgtgtagcttgcggtattgatt |
12728832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 34291425 - 34291362
Alignment:
| Q |
87 |
ttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtagcttacggta |
150 |
Q |
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| T |
34291425 |
ttctcttagctgtcaaaggtaatccaataaaatcccatgatcttgttgtgtgtagcttgcggta |
34291362 |
T |
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