View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_304 (Length: 269)
Name: NF11453A_low_304
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_304 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 33064483 - 33064733
Alignment:
| Q |
19 |
ggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33064483 |
ggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
33064582 |
T |
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| Q |
119 |
agctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaacattgcatctcctttcaaatcaacctttctctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33064583 |
agctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaacatcgcatctcctttcaaatcaacctttctctc |
33064682 |
T |
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| Q |
219 |
gccaaactccaattgaggaaaatcaatgtcaaaatttcctaccgtaactga |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33064683 |
gccaaactccaattgaggaaaatcaatgtcaaaatttccttccgtaactga |
33064733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 33066643 - 33066893
Alignment:
| Q |
19 |
ggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33066643 |
ggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
33066742 |
T |
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| Q |
119 |
agctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaacattgcatctcctttcaaatcaacctttctctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33066743 |
agctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaacatcgcatctcctttcaaatcaacctttctctc |
33066842 |
T |
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| Q |
219 |
gccaaactccaattgaggaaaatcaatgtcaaaatttcctaccgtaactga |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33066843 |
gccaaactccaattgaggaaaatcaatgtcaaaatttccttccgtaactga |
33066893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 33067729 - 33067979
Alignment:
| Q |
19 |
ggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33067729 |
ggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
33067828 |
T |
|
| Q |
119 |
agctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaacattgcatctcctttcaaatcaacctttctctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33067829 |
agctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaacatcgcatctcctttcaaatcaacctttctctc |
33067928 |
T |
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| Q |
219 |
gccaaactccaattgaggaaaatcaatgtcaaaatttcctaccgtaactga |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33067929 |
gccaaactccaattgaggaaaatcaatgtcaaaatttccttccgtaactga |
33067979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 33063389 - 33063639
Alignment:
| Q |
19 |
ggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063389 |
ggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
33063488 |
T |
|
| Q |
119 |
agctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaacattgcatctcctttcaaatcaacctttctctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
33063489 |
agctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaacatcgcatctccattcaaatcaacctttctctc |
33063588 |
T |
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| Q |
219 |
gccaaactccaattgaggaaaatcaatgtcaaaatttcctaccgtaactga |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33063589 |
gccaaactccaattgaggaaaatcaatgtcaaaatttccttccgtaactga |
33063639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 33065570 - 33065820
Alignment:
| Q |
19 |
ggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33065570 |
ggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
33065669 |
T |
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| Q |
119 |
agctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaacattgcatctcctttcaaatcaacctttctctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
33065670 |
agctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaacatcgcatctccattcaaatcaacctttctctc |
33065769 |
T |
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| Q |
219 |
gccaaactccaattgaggaaaatcaatgtcaaaatttcctaccgtaactga |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33065770 |
gccaaactccaattgaggaaaatcaatgtcaaaatttccttccgtaactga |
33065820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 33068781 - 33069031
Alignment:
| Q |
19 |
ggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33068781 |
ggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
33068880 |
T |
|
| Q |
119 |
agctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaacattgcatctcctttcaaatcaacctttctctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33068881 |
agctggctttcaccttggcatcatgtctaccatgacaaaccaactcaactgggttgttatgcacaaacatcgcatctcctttcaaatcaacctttctctc |
33068980 |
T |
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| Q |
219 |
gccaaactccaattgaggaaaatcaatgtcaaaatttcctaccgtaactga |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33068981 |
gccaaactccaattgaggaaaatcaatgtcaaaatttccttccgtaactga |
33069031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 33069868 - 33070005
Alignment:
| Q |
19 |
ggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33069868 |
ggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataacttgtaaggagtattgtaaagtatacctccat |
33069967 |
T |
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| Q |
119 |
agctggctttcaccttggcatcatgtctaccatgacaa |
156 |
Q |
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|||||||||||||||||||||||| |||||||| |||| |
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| T |
33069968 |
agctggctttcaccttggcatcatatctaccataacaa |
33070005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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