View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_305 (Length: 269)

Name: NF11453A_low_305
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_305
NF11453A_low_305
[»] chr2 (1 HSPs)
chr2 (1-259)||(36840771-36841032)
[»] chr4 (2 HSPs)
chr4 (1-259)||(18342998-18343257)
chr4 (195-241)||(22101579-22101625)
[»] chr3 (3 HSPs)
chr3 (1-95)||(46699248-46699342)
chr3 (164-254)||(18375046-18375136)
chr3 (32-95)||(18375193-18375254)
[»] chr8 (1 HSPs)
chr8 (1-95)||(11542925-11543019)
[»] scaffold0002 (2 HSPs)
scaffold0002 (153-259)||(164112-164218)
scaffold0002 (1-95)||(164272-164366)
[»] chr6 (1 HSPs)
chr6 (1-95)||(14249360-14249454)
[»] chr7 (1 HSPs)
chr7 (32-93)||(46634212-46634273)
[»] scaffold1779 (2 HSPs)
scaffold1779 (193-254)||(456-517)
scaffold1779 (1-58)||(662-719)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 36840771 - 36841032
Alignment:
Q  1 tcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagtnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  36840771 tcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagtaaaaa 36840870  T
Q  101 nnntattctgtgttcnnnnnnnnnnnn---ggaaccaacaattaccannnnnnncatactaaaaacctatttcgttctaatgattattcttaaagaatga 197  Q
       ||||||||||||               | |||||||||||||||       ||||||||| |||||||||||||||||||||||||| |||||||||    
T  36840871 aaatattctgtgttcaaaaaaaaaaaaaaagaaaccaacaattaccatttttttcatactaaagacctatttcgttctaatgattattctgaaagaatga 36840970  T
Q  198 attgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatatattct 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36840971 attgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttct 36841032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 18342998 - 18343257
Alignment:
Q  1 tcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagtnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  18342998 tcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagtaaaaa 18343097  T
Q  101 nnntattctgtgttcnnnnnnnnnnnn--ggaaccaacaattaccannnnnnncatactaaaaacctatttcgttctaatgattattcttaaagaatgaa 198  Q
       |||||||||||               | |||||||||||||||       ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  18343098 aaatattctgtgttacaaaaaaaaaaaaagaaaccaacaattaccatttttt-catactaaagacctatttcgttctaatgattattctgaaagaatgaa 18343196  T
Q  199 ttgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatatattct 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18343197 ttgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttct 18343257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 22101579 - 22101625
Alignment:
Q  195 tgaattgagttcgtataggcattttggatgccgctattgaaatagcc 241  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  22101579 tgaattgagttcgtatagacattttggatgccgctattgaaatagcc 22101625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 46699248 - 46699342
Alignment:
Q  1 tcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46699248 tcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt 46699342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 18375136 - 18375046
Alignment:
Q  164 ctatttcgttctaatgattattcttaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatat 254  Q
    |||||||||||||||  ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  18375136 ctatttcgttctaatagttattctcaaagaataaattgagttcgtataggcattttggatgccgctattgaaatattctttctagctatat 18375046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 18375254 - 18375193
Alignment:
Q  32 atttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt 95  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||    
T  18375254 atttaaataggtttgaggttgaatcatat-attttttt-tatctttcaatcaaaaagttgaagt 18375193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11542925 - 11543019
Alignment:
Q  1 tcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt 95  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11542925 tcaattcgcgggctccgctattatcggctatatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt 11543019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 164218 - 164112
Alignment:
Q  153 atactaaaaacctatttcgttctaatgattattcttaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctat 252  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  164218 atactaaagacctatttcgatctaatgattattctgaaagaatgaattgagttcttataggcattttggatgccgctattgaaatagcctttctagctat 164119  T
Q  253 atattct 259  Q
    || ||||    
T  164118 attttct 164112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 164366 - 164272
Alignment:
Q  1 tcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt 95  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  164366 tcaattcacgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcattttttactatctttcagtcaaaaagttgaagt 164272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 14249360 - 14249454
Alignment:
Q  1 tcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt 95  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14249360 tcaattcacgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcattttttactatctttcagtcaaaaagttgaagt 14249454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 46634212 - 46634273
Alignment:
Q  32 atttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaa 93  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46634212 atttaagtaggtttgaggttgaatcatatcatttttttctatctttcaatcaaaaagttgaa 46634273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1779 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 517 - 456
Alignment:
Q  193 aatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatat 254  Q
    ||||||||| |||  |||||||||||| || ||||||||||||||||||||||| |||||||    
T  517 aatgaattgcgtttttataggcatttttgacgccgctattgaaatagcctttctggctatat 456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1779; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 719 - 662
Alignment:
Q  1 tcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcat 58  Q
    ||||||| ||||| ||||| ||||| |||||||| |||| ||| ||||||||||||||    
T  719 tcaattctcgggccccgctgttatctgctacattcaaatgggtctgaggttgaatcat 662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University