View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_306 (Length: 268)
Name: NF11453A_low_306
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_306 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 41785402 - 41785135
Alignment:
| Q |
1 |
tcgatcgctgattcaacataagtttattcgaggtgattatggtttgtttttgctccgcatttattcggtcaattgttgatgtctgatcctttatagtttt |
100 |
Q |
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| T |
41785402 |
tcgatcgctgattcaacataagtttattcgaggtgattatggtttgtttttgctccgcatttattcggtcaatggttgatgtctgatcctttatagtttt |
41785303 |
T |
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| Q |
101 |
ctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcattctggagttcc |
200 |
Q |
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| T |
41785302 |
ctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcattctggagttcc |
41785203 |
T |
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| Q |
201 |
aacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagc |
268 |
Q |
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| T |
41785202 |
aacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagc |
41785135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 268
Target Start/End: Complemental strand, 10834588 - 10834356
Alignment:
| Q |
34 |
tgattatggtttgtttttgctccgcatttattcggtcaattgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgt |
133 |
Q |
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| T |
10834588 |
tgattatggtttgtttttggtccacatttatttggtcaatggttggtgcttgatccattatagttatctc-tgatcagctatctgggttgcaaactttgt |
10834490 |
T |
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| Q |
134 |
gttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaac |
233 |
Q |
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| T |
10834489 |
ggttaaattttccacctttgccaggctttcagcatactgcttctggtttcgctcatttgagagctcgaacttgatttta-gttcatgcaagttatcgaaa |
10834391 |
T |
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| Q |
234 |
gctagcctcatgtcattaacttcagcttttaaagc |
268 |
Q |
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| T |
10834390 |
tctagtcccatgtcattaacttcagcttttaaagc |
10834356 |
T |
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