View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_307 (Length: 267)

Name: NF11453A_low_307
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_307
NF11453A_low_307
[»] chr2 (17 HSPs)
chr2 (55-267)||(18727235-18727447)
chr2 (15-254)||(31846720-31846959)
chr2 (20-248)||(40829948-40830175)
chr2 (21-200)||(9731307-9731485)
chr2 (22-267)||(34342539-34342784)
chr2 (18-254)||(38295291-38295516)
chr2 (22-118)||(2308114-2308212)
chr2 (69-153)||(32294264-32294348)
chr2 (18-86)||(42242275-42242343)
chr2 (68-153)||(37810497-37810582)
chr2 (69-129)||(3858307-3858367)
chr2 (101-153)||(24026204-24026256)
chr2 (69-121)||(15926489-15926541)
chr2 (69-126)||(32294444-32294500)
chr2 (69-118)||(43617911-43617960)
chr2 (101-153)||(30850793-30850845)
chr2 (71-157)||(18899542-18899628)
[»] chr3 (12 HSPs)
chr3 (18-254)||(21386044-21386280)
chr3 (18-267)||(4962266-4962515)
chr3 (18-267)||(33693561-33693810)
chr3 (18-197)||(49458731-49458910)
chr3 (38-254)||(43173211-43173427)
chr3 (38-197)||(7437125-7437283)
chr3 (68-153)||(30238175-30238259)
chr3 (69-121)||(21718344-21718396)
chr3 (18-52)||(1666391-1666425)
chr3 (69-121)||(25050034-25050086)
chr3 (71-157)||(53836334-53836420)
chr3 (71-127)||(1666335-1666390)
[»] chr4 (18 HSPs)
chr4 (18-254)||(33139103-33139340)
chr4 (18-251)||(24966047-24966281)
chr4 (13-184)||(46862496-46862668)
chr4 (18-267)||(32890172-32890421)
chr4 (18-197)||(29509618-29509797)
chr4 (23-121)||(26490837-26490935)
chr4 (25-184)||(35518081-35518231)
chr4 (71-184)||(50517493-50517606)
chr4 (18-98)||(12754773-12754851)
chr4 (112-267)||(46287006-46287162)
chr4 (60-153)||(40317270-40317363)
chr4 (60-153)||(40327344-40327437)
chr4 (69-129)||(871954-872014)
chr4 (101-153)||(25842622-25842674)
chr4 (69-130)||(24454025-24454086)
chr4 (68-136)||(21306005-21306073)
chr4 (101-153)||(26955687-26955739)
chr4 (159-267)||(53574004-53574111)
[»] chr6 (11 HSPs)
chr6 (18-267)||(2607203-2607452)
chr6 (42-267)||(16438997-16439221)
chr6 (38-249)||(28900407-28900618)
chr6 (20-267)||(31534665-31534888)
chr6 (63-267)||(24194767-24194971)
chr6 (68-267)||(33640878-33641077)
chr6 (18-68)||(31975310-31975360)
chr6 (18-70)||(24195541-24195593)
chr6 (101-151)||(15381218-15381268)
chr6 (181-267)||(31975359-31975445)
chr6 (68-153)||(21010521-21010605)
[»] chr8 (25 HSPs)
chr8 (18-254)||(12737639-12737875)
chr8 (18-254)||(12521961-12522197)
chr8 (18-267)||(42423501-42423750)
chr8 (18-184)||(27878166-27878333)
chr8 (18-184)||(28018347-28018514)
chr8 (19-267)||(27915111-27915360)
chr8 (19-267)||(27961530-27961779)
chr8 (18-267)||(44977027-44977275)
chr8 (18-211)||(27974522-27974716)
chr8 (18-211)||(28031791-28031985)
chr8 (13-189)||(8029404-8029578)
chr8 (18-184)||(27869492-27869661)
chr8 (38-197)||(24082564-24082723)
chr8 (18-120)||(6387457-6387559)
chr8 (112-267)||(6387748-6387903)
chr8 (21-120)||(41394306-41394405)
chr8 (60-177)||(3007408-3007524)
chr8 (89-153)||(33177496-33177560)
chr8 (69-130)||(37131184-37131245)
chr8 (69-130)||(35879824-35879885)
chr8 (69-121)||(17234880-17234932)
chr8 (69-121)||(24067269-24067321)
chr8 (71-157)||(19484589-19484675)
chr8 (101-153)||(4870784-4870837)
chr8 (76-121)||(7760961-7761006)
[»] chr1 (17 HSPs)
chr1 (24-267)||(49236559-49236802)
chr1 (18-254)||(47371125-47371361)
chr1 (18-254)||(49452616-49452851)
chr1 (18-189)||(28403534-28403707)
chr1 (21-218)||(3593581-3593778)
chr1 (38-267)||(42303956-42304186)
chr1 (60-267)||(32759699-32759906)
chr1 (20-179)||(25253911-25254073)
chr1 (21-144)||(19863276-19863399)
chr1 (38-250)||(35176842-35177056)
chr1 (25-179)||(48966072-48966222)
chr1 (68-153)||(46042298-46042383)
chr1 (69-121)||(52182490-52182542)
chr1 (78-153)||(226321-226396)
chr1 (68-115)||(42637749-42637796)
chr1 (71-157)||(1242920-1243006)
chr1 (71-157)||(41353817-41353903)
[»] chr5 (8 HSPs)
chr5 (22-244)||(29716461-29716683)
chr5 (59-254)||(34218740-34218934)
chr5 (69-129)||(21490047-21490107)
chr5 (68-144)||(31913806-31913883)
chr5 (101-153)||(36196017-36196069)
chr5 (101-153)||(15286133-15286185)
chr5 (69-121)||(16497519-16497571)
chr5 (71-157)||(5650412-5650498)
[»] chr7 (14 HSPs)
chr7 (33-254)||(43172374-43172595)
chr7 (21-179)||(23017367-23017525)
chr7 (18-190)||(21486508-21486681)
chr7 (21-173)||(42610901-42611055)
chr7 (60-267)||(16709833-16710040)
chr7 (60-267)||(17684069-17684276)
chr7 (94-265)||(5771747-5771917)
chr7 (21-130)||(31445777-31445885)
chr7 (68-153)||(6268856-6268941)
chr7 (60-127)||(42043744-42043810)
chr7 (69-121)||(33496988-33497040)
chr7 (71-157)||(4639513-4639599)
chr7 (71-157)||(14741827-14741913)
chr7 (101-153)||(1254158-1254210)
[»] scaffold0573 (1 HSPs)
scaffold0573 (38-249)||(9176-9387)
[»] scaffold0013 (1 HSPs)
scaffold0013 (21-190)||(89656-89826)
[»] scaffold0118 (1 HSPs)
scaffold0118 (101-153)||(38242-38294)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 55 - 267
Target Start/End: Original strand, 18727235 - 18727447
Alignment:
Q  55 taagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaagg 154  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18727235 taagtcatctataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttcttcaaaagg 18727334  T
Q  155 tcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaaccctaactggtatgtgct 254  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||||||||||    
T  18727335 tcgtcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcgaaatttaccccatcggaatcgcaaccctaattggtatgtgct 18727434  T
Q  255 atcttgttcatgg 267  Q
     ||||||||||||    
T  18727435 ctcttgttcatgg 18727447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 31846720 - 31846959
Alignment:
Q  15 atgaacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaata 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||  ||||||| ||||||||||||||    
T  31846720 atgaacgcacaaaatcataagtttcataagtctctacgtttaagtcatccataaaaccatctaaaaaagcaagttttgcaagttcctaaagttgttaata 31846819  T
Q  115 aaactattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcaga 214  Q
    |||||||  ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||| ||||||  || || | ||||  |    
T  31846820 aaactatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaacaagcgtcgcaatcactggcgttgaaatctaa 31846919  T
Q  215 atttaccccatcgaaatcgcaaccctaactggtatgtgct 254  Q
    |||| |  | ||| ||||||||||||||||||||||||||    
T  31846920 atttccatcgtcggaatcgcaaccctaactggtatgtgct 31846959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 40830175 - 40829948
Alignment:
Q  20 cgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaact 119  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||     
T  40830175 cgcacaaaatcataagtttcataaatctctaagtttaagtcatccataaaatcatccaaaaaagcaagtttcacaagttcctatagttgttaataaaacc 40830076  T
Q  120 attcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaattta 219  Q
    ||  |||| || ||||||||||||| |||||||||||| ||||||| ||||| ||||||| |||| ||||| |||||||| | || | |||| ||||||     
T  40830075 atctaaaacataaactagttaatttcttcaaaaggtcaacaaacactaccactgcaaccctaacc-gcgtcgcaatcatcagcgtggaaatctgaatttc 40829977  T
Q  220 ccccatcgaaatcgcaaccctaactggta 248  Q
    | || || |||||||||||||||||||||    
T  40829976 caccgtcaaaatcgcaaccctaactggta 40829948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 9731485 - 9731307
Alignment:
Q  21 gcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaacta 120  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| ||  ||||||||||||||||||||    
T  9731485 gcacaaaatcataagtttcgtaagtctttaagtttaagtcatccataaaaccatccaaaaaa-caagtttcacaaattactaaagttgttaataaaacta 9731387  T
Q  121 ttcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcg 200  Q
    |  ||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||| || | ||||| |||||||||    
T  9731386 tctaaaaaataaactaattaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaatcggcgtcgcaatcatcg 9731307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 34342784 - 34342539
Alignment:
Q  22 cacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    ||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||| |||||| ||||||||||   ||||||||||||||||||||    
T  34342784 cacaaaatcataaatttcataagtctctaagtttaagccatctataaaactatccaaaatagcaagtttcacaagttttcaaagttgttaataaaactat 34342685  T
Q  122 tcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttacc 221  Q
      ||||||| ||||||||||||| || ||||||||| |||||||||||||| |||||| ||||  |||| |||| | | | |||| |||  |||||| |     
T  34342684 ctaaaaaataaactagttaatttcttgaaaaggtcaacaaacaccaccaccacaaccctaaccgacgtcgcaattaccagcgtcgaaatatgaatttcca 34342585  T
Q  222 ccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
    || | | ||||||||||||||||||||||||||  ||| |||||||    
T  34342584 ccgttggaatcgcaaccctaactggtatgtgctcccttattcatgg 34342539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 38295291 - 38295516
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    |||||||||||||||||||||||||||||| ||||||||||            ||||||||||||| ||| ||||||| ||| |||||||| ||||||||    
T  38295291 aacgcacaaaatcataagtttcataagtctttaagtttaag------------ccatccaaaaaagaaagtttcacaaattcctaaagttgctaataaaa 38295378  T
Q  118 ctattcaaaaaatcaactagttaatttattc-aaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaat 216  Q
    ||||  ||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||| |||||||||||| ||   ||| |||  ||||    
T  38295379 ctatctaaaaaataaactagttaatttcttcaaaaaggtcagcaaacaccaccaccgcaaccctaaccggcgtcacaatcaccgacatcgaaatatgaat 38295478  T
Q  217 ttaccccatcgaaatcgcaaccctaactggtatgtgct 254  Q
    || | |  ||| ||||||||||||||||||||||||||    
T  38295479 ttccacagtcggaatcgcaaccctaactggtatgtgct 38295516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 2308114 - 2308212
Alignment:
Q  22 cacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatcca--aaaaagcaaggttcacaagttcgtaaagttgttaataaaac 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||  ||||| |||| ||||||||||| ||||||||||||||||||    
T  2308114 cacaaaatcataagtttcataagtctctaagtttaagccatccataaaaacatccaataaaaaacaagtttcacaagttcctaaagttgttaataaaac 2308212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 32294348 - 32294264
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  32294348 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactatccaaaaaataaactagttaatttcttcaaaag 32294264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 42242343 - 42242275
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaa 86  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42242343 aacgcacaaaatcataagtttcataagtctctaagtttaggtcatccataaaaccatccaaaaaagcaa 42242275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 37810497 - 37810582
Alignment:
Q  68 aaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    ||||||||| ||| || ||| |||||| |||  |||||||||||||||| |||| |||||||| ||||||||||||| ||||||||    
T  37810497 aaaccatccgaaagagtaagtttcacatgttgataaagttgttaataaacctatccaaaaaataaactagttaatttcttcaaaag 37810582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 3858307 - 3858367
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaa 129  Q
    ||||||||||||| ||||| ||||||||||| || |||||||||||||||||| |||||||    
T  3858307 aaccatccaaaaaggcaagtttcacaagttcctatagttgttaataaaactatccaaaaaa 3858367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 24026256 - 24026204
Alignment:
Q  101 taaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  24026256 taaagttgttaataaaactatccaaaaaataaactagttaatttcttcaaaag 24026204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 15926541 - 15926489
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    ||||||||||||| ||||| |||||| |||| |||||||||||||||||||||    
T  15926541 aaccatccaaaaaggcaagtttcacatgttcctaaagttgttaataaaactat 15926489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 32294444 - 32294500
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaa 126  Q
    ||||||| |||||| |||| ||||||||||| |||| |||||||||||||||||||||    
T  32294444 aaccatcaaaaaaatcaagtttcacaagttcctaaa-ttgttaataaaactattcaaa 32294500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 43617960 - 43617911
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaac 118  Q
    ||||||||||||| ||||| ||||||||||  ||||||||||||||||||    
T  43617960 aaccatccaaaaaggcaagtttcacaagtttctaaagttgttaataaaac 43617911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 30850845 - 30850793
Alignment:
Q  101 taaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    ||||||||||||||||||||| || ||||| | | ||||||||||||||||||    
T  30850845 taaagttgttaataaaactatccataaaataaccaagttaatttattcaaaag 30850793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 18899542 - 18899628
Alignment:
Q  71 ccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtca 157  Q
    |||||| |||||| ||| ||||||||||  |||| |||  ||||||||||| |||||||  |||||| |||||| ||| ||||||||    
T  18899542 ccatcccaaaaagaaagtttcacaagtttctaaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtca 18899628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 21386044 - 21386280
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  21386044 aacgcacaaaataataagtttcataagtctctaagtttaagtcatccataaaaccatccgaaaaagcaagtttcacaagttcgtaaagttgttaataaaa 21386143  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatt 217  Q
    || | |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||   | || ||  ||||||||| |||||    
T  21386144 ctgtccaaaaaataaactagttaatttcttcaaaaggtcatcaaacaccaccaccgcaaccctaaccaacatccttaacaccgacgtcgcaatcggaatt 21386243  T
Q  218 taccccatcgaaatcgcaaccctaactggtatgtgct 254  Q
    | |||| ||| ||||| ||||||||||||||||||||    
T  21386244 tcccccgtcggaatcgtaaccctaactggtatgtgct 21386280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 4962266 - 4962515
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  4962266 aacgcacaaaatcataagtttcacaagtctctaagtttaagccttccataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgtcaataaaa 4962365  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatt 217  Q
    ||||  ||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||| ||||| |||| ||||||||| ||||| ||   |||||    
T  4962366 ctatctaaaaaataaactagttaatttcttcaaaaggttaacaaacaccaccaccgcaaccctaaccaacgtcgcaatcatcgatgtcgaaacatgaatt 4962465  T
Q  218 taccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
    | | || ||  ||||||| ||||||||| ||||||||  | |||||||||    
T  4962466 tccaccgtctgaatcgcagccctaactgatatgtgctcccctgttcatgg 4962515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 33693810 - 33693561
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  33693810 aacgcacaaaatcataagtttcataagtctctaagtttaagccatccataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaa 33693711  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatt 217  Q
    ||||  ||||||| ||||| ||||||| |||||||||||| ||||||||||||| ||||||  |  | ||||| ||||||  ||  | | |||| |||||    
T  33693710 ctatctaaaaaataaactacttaatttcttcaaaaggtcaacaaacaccaccactgcaaccgtagtcggcgtcgcaatcacaggcattgaaatctgaatt 33693611  T
Q  218 taccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
    | |||| |||||||  ||||| |||||||||||||||  | |||||||||    
T  33693610 ttccccgtcgaaattacaaccataactggtatgtgcttccctgttcatgg 33693561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 49458910 - 49458731
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  49458910 aacgcacaaaatcataaatttcataagtctctaagtttaagtcatccataaaaccatccaaaaaatcaagtttcacaagttcctaaagttgttaataaaa 49458811  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatca 197  Q
    ||||  ||||||| ||||||||||||| |||||||||||| ||||||| |||||| |||||| |||| ||| | ||||||    
T  49458810 ctatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacactaccaccacaaccctaaccggcgacgcaatca 49458731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 38 - 254
Target Start/End: Complemental strand, 43173427 - 43173211
Alignment:
Q  38 tcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactag 137  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||  ||||||| || |||    
T  43173427 tcataagtttctaagtttaagtcatccataaaaccatccaaaaaagcaagtttcaccagttcctaaagttgttaataaaactatctaaaaaataaattag 43173328  T
Q  138 ttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaac 237  Q
    ||||||| |||||||||||| |||||||| || ||||||||| |||| || || |||||| | | |||| |||  || |||    | ||| |||||||||    
T  43173327 ttaatttcttcaaaaggtcaacaaacaccgccgccgcaaccctaaccggcatcgcaatcaccagcgtcgaaatatgagtttctatcgtcggaatcgcaac 43173228  T
Q  238 cctaactggtatgtgct 254  Q
     ||||||||||||||||    
T  43173227 tctaactggtatgtgct 43173211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 7437125 - 7437283
Alignment:
Q  38 tcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactag 137  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| |||| || |||||||| |||||||||||||||||||||  ||||||| ||||||    
T  7437125 tcataagtctttaagtttaagccatccataaaaccatccaaaaaa-caagtttaacaagttcctaaagttgttaataaaactatctaaaaaataaactag 7437223  T
Q  138 ttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatca 197  Q
    ||||||  ||||||| || | ||||||||||||||||||| | |||||||||| ||||||    
T  7437224 ttaattacttcaaaaagtaaacaaacaccaccaccgcaactctaaccagcgtcgcaatca 7437283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 30238175 - 30238259
Alignment:
Q  68 aaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    ||||||||||||||  |||| |||||| |||   ||||||||||||||| |||| |||||||| ||||||||||||| ||||||||    
T  30238175 aaaccatccaaaaatacaagtttcacaggtttcaaaagttgttaataaacctatccaaaaaataaactagttaattt-ttcaaaag 30238259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 21718344 - 21718396
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    ||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||    
T  21718344 aaccatccaaaaaggcaagtttcacaagttcttaaaattgttaataaaactat 21718396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 1666425 - 1666391
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaag 52  Q
    |||||||||||||||||||||||||||||||||||    
T  1666425 aacgcacaaaatcataagtttcataagtctctaag 1666391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 25050086 - 25050034
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    ||||||||||||| ||||| |||||||||||  |||| |||||||||||||||    
T  25050086 aaccatccaaaaatgcaagtttcacaagttcccaaaggtgttaataaaactat 25050034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 53836420 - 53836334
Alignment:
Q  71 ccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtca 157  Q
    |||||| |||||| ||| ||||||||||  |||| |||  ||||||||||| |||||||  |||||| |||||| ||| ||||||||    
T  53836420 ccatcccaaaaaggaagtttcacaagtttataaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtca 53836334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 1666390 - 1666335
Alignment:
Q  71 ccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaa 127  Q
    ||||||| ||||||||| || ||||||   |||||||||||||||||||||||||||    
T  1666390 ccatccacaaaagcaagttt-acaagtgtctaaagttgttaataaaactattcaaaa 1666335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 33139340 - 33139103
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  33139340 aacgcacaaaatcataagtttcataagtctctaagtttaatccatgcataaaaccatccaaaatagcaagtttcacaagttcctaaagttgttaataaaa 33139241  T
Q  118 ctat-tcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaat 216  Q
    |||| | ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||  |||||||||| |||| |||| ||||    
T  33139240 ctatctaaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaaccggcgttgcaatcatcggagtcgaaatctgaat 33139141  T
Q  217 ttaccccatcgaaatcgcaaccctaactggtatgtgct 254  Q
    || | || ||| |||| ||||||||| |||||| ||||    
T  33139140 ttccaccgtcggaatcacaaccctaattggtatctgct 33139103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 24966047 - 24966281
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctct-aagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaa 116  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  24966047 aacgcacaaaatcataagtttcataagtctcttaagtttaaatcatccataaaaccatccaaaaaaacaagtttcacaagttcctaaagttgttaataaa 24966146  T
Q  117 actattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaat 216  Q
    |||||  ||||||  ||||||||||||| |||||||||||| ||||||||||||||||||||| |||| || |  |||||  ||| |||| ||||  | |    
T  24966147 actatctaaaaaacaaactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaaccggcattgcaatctccggcgtcgaaatctaagt 24966246  T
Q  217 ttaccccatcgaaatcgcaaccctaactggtatgt 251  Q
    || | || |||||||||||||||||| ||||||||    
T  24966247 ttccaccgtcgaaatcgcaaccctaattggtatgt 24966281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 46862496 - 46862668
Alignment:
Q  13 agatgaacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaa 112  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  46862496 agattaacacacaaaatcataagtttcataagtctctaagtttaagtcatccataaaatcatccaaaaaagcaagtttcacaagttcttaaagttgttaa 46862595  T
Q  113 taaaactattcaaaaaatcaactagttaatttattc-aaaaggtcatcaaacaccaccaccgcaaccccaacc 184  Q
    |||||||||  ||||||| ||||||||||||| ||| ||||||||| ||||||| ||||||||||||| ||||    
T  46862596 taaaactatctaaaaaataaactagttaatttcttcaaaaaggtcaacaaacactaccaccgcaaccctaacc 46862668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 32890421 - 32890172
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaa--gcaaggttcacaagttcgtaaagttgttaataa 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  | ||| |||| || ||| |||||||||||||||    
T  32890421 aacgcccaaaatcataagtttcataagtctctaagtttaagtcatccataaa-ccatccaaaaaaaaggaagtttcaaaatttcctaaagttgttaataa 32890323  T
Q  116 aactattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaa 215  Q
    ||||||  ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||| |||||| ||  |||| |||  |||    
T  32890322 aactatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaaccggcgtcgcaatcaccgacgtcgaaatatgaa 32890223  T
Q  216 tttaccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
    ||| | || | | ||| |||||| |||||||||||||||  | |||||||||    
T  32890222 tttccaccgttggaat-gcaaccataactggtatgtgctcccatgttcatgg 32890172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 29509618 - 29509797
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaa-gcaaggttcacaagttcgtaaagttgttaataaa 116  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||| ||||||| ||| | ||||||||||||||    
T  29509618 aacgcccaaaatcataagtttcatgagtctctaagtttaagtcatccataaa-ccatccaaaaaaaggaagtttcacaatttccttaagttgttaataaa 29509716  T
Q  117 actattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatca 197  Q
    |||||  ||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||| |||  ||||| ||||||    
T  29509717 actatctaaaaaataaaccagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaactggcgtcgcaatca 29509797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 26490837 - 26490935
Alignment:
Q  23 acaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  26490837 acaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactat 26490935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 35518081 - 35518231
Alignment:
Q  25 aaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattca 124  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||  |||         ||||||||||||||||||||||||    
T  35518081 aaaatcataagtttcataagtctctaaatttaagtcatctgtaaaaccatccaaaaaaacaaatttc---------taaagttgttaataaaactattca 35518171  T
Q  125 aaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaacc 184  Q
    | |||| ||||||||||||| |||||||||||| |||| |||||||||||||||| ||||    
T  35518172 ataaataaactagttaatttcttcaaaaggtcaacaaataccaccaccgcaaccctaacc 35518231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 50517606 - 50517493
Alignment:
Q  71 ccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccacca 170  Q
    ||||||||||||||||  ||||||||||| |||||||||||||||| | ||  ||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  50517606 ccatccaaaaaagcaaatttcacaagttcctaaagttgttaataaatccatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccacca 50517507  T
Q  171 ccgcaaccccaacc 184  Q
    ||||||||| ||||    
T  50517506 ccgcaaccctaacc 50517493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 12754851 - 12754773
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagtt 98  Q
    ||||||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||| ||||||| ||||||||||    
T  12754851 aacgcacaaaatcataagtttcataagtct--aagtttaatccatccataaaaccatccaaacaagcaagtttcacaagtt 12754773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 46287162 - 46287006
Alignment:
Q  112 ataaaactat-tcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaat 210  Q
    |||||||||| | ||||||| ||||||||||||| |||||||||||| |||||| |||||||||||||| ||||  |||| ||||||  || |||| |||    
T  46287162 ataaaactatctaaaaaaataaactagttaatttcttcaaaaggtcaacaaacatcaccaccgcaaccctaaccgacgtcgcaatcacgggagtcgaaat 46287063  T
Q  211 cagaatttaccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
      |||||| |  | | | ||||||||||||||||||||||||||  ||| |||||||    
T  46287062 ttgaatttccatcgttggaatcgcaaccctaactggtatgtgctcccttattcatgg 46287006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 40317270 - 40317363
Alignment:
Q  60 catccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    |||||| | |||||||| ||||| |||| |||| |||||  ||||||| |||||||| ||||||||||||| ||||||||||||| ||||||||    
T  40317270 catccaaagaaccatccgaaaaaccaagtttcagaagtttctaaagttattaataaatctattcaaaaaatgaactagttaatttcttcaaaag 40317363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 40327344 - 40327437
Alignment:
Q  60 catccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    |||||| | |||||||| ||||| |||| |||| |||||  ||||||| |||||||| ||||||||||||| ||||||||||||| ||||||||    
T  40327344 catccaaagaaccatccgaaaaaccaagtttcagaagtttctaaagttattaataaatctattcaaaaaatgaactagttaatttcttcaaaag 40327437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 872014 - 871954
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaa 129  Q
    ||||||||||||| ||||  ||||||||||| |||| |||||||||||||||| |||||||    
T  872014 aaccatccaaaaaggcaaatttcacaagttcctaaatttgttaataaaactatccaaaaaa 871954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 25842622 - 25842674
Alignment:
Q  101 taaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    |||||||||||||||| |||| |||||||| ||||||||||||| ||||||||    
T  25842622 taaagttgttaataaagctatccaaaaaataaactagttaatttcttcaaaag 25842674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 24454086 - 24454025
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaat 130  Q
    ||||||||||||| ||||| |||||| |||| ||| |||||||||||||||||  |||||||    
T  24454086 aaccatccaaaaaggcaagtttcacacgttcctaacgttgttaataaaactatataaaaaat 24454025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 21306005 - 21306073
Alignment:
Q  68 aaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaacta 136  Q
    |||||||||||||||||||| | ||||||||  |||| || |||||||||| || |||||||| |||||    
T  21306005 aaaccatccaaaaaagcaagatacacaagtttttaaatttattaataaaaccatccaaaaaataaacta 21306073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 26955739 - 26955687
Alignment:
Q  101 taaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    ||||||| ||||||||||||| |||||||| ||| | ||||||| ||||||||    
T  26955739 taaagtttttaataaaactatccaaaaaataaacaatttaatttcttcaaaag 26955687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 53574004 - 53574111
Alignment:
Q  159 caaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaaccctaactggtatgtgctatct 258  Q
    ||||||||||||||||||||  |||| ||||  |||||| |  ||||| |||| |||||| | || ||| ||||  ||||||||||||||| ||||| |     
T  53574004 caaacaccaccaccgcaacct-aaccggcgtagcaatcaacaatgtcgaaatcggaatttccaccgtcggaatcagaaccctaactggtatatgctaccc 53574102  T
Q  259 tgttcatgg 267  Q
    |||||||||    
T  53574103 tgttcatgg 53574111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 2607452 - 2607203
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||  |||||||||||| ||||    
T  2607452 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaatcatccaaaaaagcaagttttacaagtttctaaagttgttaaaaaaa 2607353  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatt 217  Q
    ||||  ||||||  ||||||||||||| |||||||||||| ||||||| |||||| |||||| |||| ||||| |||||| || ||||| |||  |||||    
T  2607352 ctatctaaaaaagaaactagttaattttttcaaaaggtcaacaaacactaccaccacaaccctaaccggcgtcgcaatcaccgatgtcgaaatatgaatt 2607253  T
Q  218 taccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
    | | || ||| ||||||||  |||||||||||||||| || |||||||||    
T  2607252 tccaccgtcggaatcgcaatgctaactggtatgtgctctcatgttcatgg 2607203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 42 - 267
Target Start/End: Complemental strand, 16439221 - 16438997
Alignment:
Q  42 aagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaa 141  Q
    |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||  ||||||| ||||||||||    
T  16439221 aagtctctaagtttcagacatccataaaaccatccaaaaaagcaagtttcacaagtttctaaagttgttaataaaactatctaaaaaataaactagttaa 16439122  T
Q  142 tttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaacccta 241  Q
    ||| |||||||||||| ||||||||||||| ||||||| ||||| |||| |||||| ||| |||| ||||  ||||| | |  || | ||||||||||||    
T  16439121 tttcttcaaaaggtcaacaaacaccaccactgcaaccctaaccaacgtcgcaatcaccggcgtcgaaatctaaatttccactgtc-agatcgcaacccta 16439023  T
Q  242 actggtatgtgctatcttgttcatgg 267  Q
    |||||||||||||  | |||||||||    
T  16439022 actggtatgtgctcccatgttcatgg 16438997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 38 - 249
Target Start/End: Original strand, 28900407 - 28900618
Alignment:
Q  38 tcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactag 137  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  ||||||| ||||||    
T  28900407 tcataagtctctaagtttaagtcattcataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactatctaaaaaataaactag 28900506  T
Q  138 ttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaac 237  Q
    ||||||| ||||||||| || ||||||| |||||  |||||| |||| | ||| |||| | ||| || | |||  |||||| | || |||||||| ||||    
T  28900507 ttaatttcttcaaaaggacaacaaacactaccacaacaaccctaaccggtgtcgcaataaacggcgttgaaatatgaatttccaccgtcgaaatcacaac 28900606  T
Q  238 cctaactggtat 249  Q
    ||||||||||||    
T  28900607 cctaactggtat 28900618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 31534665 - 31534888
Alignment:
Q  20 cgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaact 119  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| |||         |||||||||||||||||||    
T  31534665 cgcacaaaatcataagtttcatatgtctctaagtttaagtcattcgtaaaaccatccaaaaaagcaagtttc---------taaagttgttaataaaact 31534755  T
Q  120 attcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaattta 219  Q
    ||  || |||| ||||| ||||||| |||||||| ||| |||||||||  ||||||||||               | ||||| |||| |||| ||||||     
T  31534756 atctaagaaataaactacttaatttcttcaaaagatcaacaaacaccatgaccgcaaccc---------------taatcggcgtcgaaatctgaatttc 31534840  T
Q  220 ccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
    | || ||||||||||||||||||||| |||||||| ||||||||||||    
T  31534841 caccgtcgaaatcgcaaccctaactgatatgtgctctcttgttcatgg 31534888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 267
Target Start/End: Complemental strand, 24194971 - 24194767
Alignment:
Q  63 ccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtcatcaaa 162  Q
    ||||||||||||||||||||| ||| ||||||| ||| ||||||||||| |||||||||  ||||||| ||||||||||||| |||||||||||| ||||    
T  24194971 ccataaaaccatccaaaaaagaaagtttcacaaattcctaaagttgttattaaaactatctaaaaaataaactagttaatttcttcaaaaggtcagcaaa 24194872  T
Q  163 caccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaaccctaactggtatgtgctatcttgtt 262  Q
    | |||||||||||| || |||||| ||   ||||| ||  |||  |||  |||||| | || ||| | ||||||||||||||||||| ||||  | ||||    
T  24194871 ctccaccaccgcaatcctaaccagtgttgtaatcaccgacgtcaaaatatgaatttccaccgtcggagtcgcaaccctaactggtatatgctcccatgtt 24194772  T
Q  263 catgg 267  Q
    |||||    
T  24194771 catgg 24194767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 267
Target Start/End: Original strand, 33640878 - 33641077
Alignment:
Q  68 aaaccatccaaaaaa-gcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacacc 166  Q
    ||||||||||||||| | ||| ||||||| ||| |||||||||||||||||||||  ||||||| ||||||||||||| |||||||||||| | ||||||    
T  33640878 aaaccatccaaaaaaaggaagtttcacaatttcctaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaactaacacc 33640977  T
Q  167 accaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatg 266  Q
    ||||||||||||| |||  ||||| |||||| ||  |||| |||| |||||| | || | | ||| |||||| |||||||||||||||  | ||||||||    
T  33640978 accaccgcaaccctaacttgcgtcgcaatcaccgacgtcgaaatctgaatttccaccgttggaat-gcaaccataactggtatgtgctcccatgttcatg 33641076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 31975310 - 31975360
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataa 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31975310 aacgcacaaaatcataagtttcataagtctctaagtctaagtcatccataa 31975360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 24195593 - 24195541
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaa 70  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||| ||||||    
T  24195593 aacgcacaaaatcataagtttcataaatctctaggtttaagccatcaataaaa 24195541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 15381218 - 15381268
Alignment:
Q  101 taaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaa 151  Q
    |||| |||||||||||||||| |||||||| ||| ||||||||| ||||||    
T  15381218 taaaattgttaataaaactatccaaaaaataaacaagttaatttcttcaaa 15381268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 31975359 - 31975445
Alignment:
Q  181 aaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
    ||||||||||  ||||| |||||||  |||  |||||| | || ||| ||||||||||||||||||||||||||  | |||||||||    
T  31975359 aaccagcgtcgtaatcaccggtgtcaaaatatgaatttccaccttcggaatcgcaaccctaactggtatgtgctcccctgttcatgg 31975445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 21010521 - 21010605
Alignment:
Q  68 aaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    |||||||||||||||  ||| ||||||||||  ||||||||||||| || ||||  |||  || ||||||||||||| ||||||||    
T  21010521 aaaccatccaaaaaat-aagtttcacaagtttctaaagttgttaattaacctatcaaaattataaactagttaatttcttcaaaag 21010605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 12737639 - 12737875
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||||||||||||| ||||||||||||||||||||||  | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |    
T  12737639 aacgcacaaaatcataaatttcataagtctctaagtttaaaccttccataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataata 12737738  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatt 217  Q
    ||||   |||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||| |||| ||||||||||  ||| |||| |||||    
T  12737739 ctatcttaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccactgcaaccctaaccaacgtcgcaatcatcggcatcgaaatctgaatt 12737838  T
Q  218 taccccatcgaaatcgcaaccctaactggtatgtgct 254  Q
    | | || ||| |||||||||||||||| ||| |||||    
T  12737839 ttcaccgtcggaatcgcaaccctaactagtacgtgct 12737875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 12521961 - 12522197
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||| | ||||||||||| ||||||||||| |||||    
T  12521961 aacgcaccaaatcataagtttcataagtctttaagtttaagtcatccataaatcaacccaaaaaagcatgtttcacaagttcctaaagttgttattaaaa 12522060  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatt 217  Q
    ||||  ||||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||| || |  |  | |||||||||| ||||||||| |||||    
T  12522061 ctatcaaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccgccgcaacccaaatcgacaacgcaatcatcggcgtcgcaatctgaatt 12522160  T
Q  218 taccccatcgaaatcgcaaccctaactggtatgtgct 254  Q
    | | ||  || ||||||||||||||||||||||||||    
T  12522161 tccaccgccggaatcgcaaccctaactggtatgtgct 12522197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 42423750 - 42423501
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaa--gcaaggttcacaagttcgtaaagttgttaataa 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  | ||| ||||||| ||| |||||||||||||||    
T  42423750 aacgcccaaaatcataagtttcataagtctctaagtttaagtcatccataaa-ccatccaaaaaaaaggaagtttcacaatttcctaaagttgttaataa 42423652  T
Q  116 aactattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaa 215  Q
    ||||||  ||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||| |||  ||||| |||||| ||| |||| |||| |||    
T  42423651 aactatctaaaaaataaactagttaatttcttcaaaaggtcaactaacaccaccaccgcaaccctaactggcgtcgcaatcaccggcgtcgaaatctgaa 42423552  T
Q  216 tttaccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
    ||| | || | | ||| |||||| ||||||||||||||| || |||||||||    
T  42423551 tttccaccgttggaat-gcaaccataactggtatgtgctctcatgttcatgg 42423501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 27878166 - 27878333
Alignment:
Q  18 aacgcacaaaatcataagtttcataa-gtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaa 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||    
T  27878166 aacgcacaaaatcataagtttcataaagtctctaagtttaagtcatctataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgataataaa 27878265  T
Q  117 actattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaacc 184  Q
    |||||  ||||||| ||||||||||||| |||||||||||| |||||||||||| |||||||| ||||    
T  27878266 actatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccatcgcaaccctaacc 27878333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 28018347 - 28018514
Alignment:
Q  18 aacgcacaaaatcataagtttcataa-gtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaa 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||    
T  28018347 aacgcacaaaatcataagtttcataaagtctctaagtttaagtcatctataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgataataaa 28018446  T
Q  117 actattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaacc 184  Q
    |||||  ||||||| ||||||||||||| |||||||||||| |||||||||||| |||||||| ||||    
T  28018447 actatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccatcgcaaccctaacc 28018514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 27915111 - 27915360
Alignment:
Q  19 acgcacaaaatcataagtttcataa-gtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  27915111 acgcacaaaatcataagtttcctaaagtctctaagtttaagtcatctataaaaccatccaaaaaagcaagtttcacaagttcctaaaattgttaataaaa 27915210  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatt 217  Q
    ||||  ||||||| ||||||||||||| |||||||||||| |||||||||||| |||||||| ||||  | | ||||||| ||| |||| ||||  ||||    
T  27915211 ctatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccatcgcaaccctaaccgacataacaatcaccggcgtcgaaatctaaatt 27915310  T
Q  218 taccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
    | | |  ||| |||| ||||||| | |||||||||||  | |||||||||    
T  27915311 ttcgctttcggaatcacaaccctgattggtatgtgctcccatgttcatgg 27915360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 27961530 - 27961779
Alignment:
Q  19 acgcacaaaatcataagtttcataa-gtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  27961530 acgcacaaaatcataagtttcctaaagtctctaagtttaagtcatctataaaaccatccaaaaaagcaagtttcacaagttcctaaaattgttaataaaa 27961629  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatt 217  Q
    ||||  ||||||| ||||||||||||| |||||||||||| |||||||||||| |||||||| ||||  | | ||||||| ||| |||| ||||  ||||    
T  27961630 ctatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccatcgcaaccctaaccgacataacaatcaccggcgtcgaaatctaaatt 27961729  T
Q  218 taccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
    | | |  ||| |||| ||||||| | |||||||||||  | |||||||||    
T  27961730 ttcgctttcggaatcacaaccctgattggtatgtgctcccatgttcatgg 27961779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 44977275 - 44977027
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||    
T  44977275 aacgcacaaaatcataagtttcataagtctctaagttcaagtcatccataaaaccattcaaaaaagcaagtttcacaagttcctaaagttgttaataaaa 44977176  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatt 217  Q
    ||||  ||||||| ||||||||||||| |||||||||| | |||||| ||| ||| |||||| |||  | ||| |  ||||| |||||| |||| |||||    
T  44977175 ctatctaaaaaataaactagttaatttcttcaaaaggtta-caaacagcactaccacaaccctaactggtgtcgctctcatccgtgtcgaaatctgaatt 44977077  T
Q  218 taccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
    | | || ||  ||||| ||| ||||| ||||||||||  | |||||||||    
T  44977076 ttcaccgtcagaatcgtaactctaacaggtatgtgctcccctgttcatgg 44977027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 27974522 - 27974716
Alignment:
Q  18 aacgcacaaaatcataagtttcataa-gtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaa 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||    
T  27974522 aacgcacaaaatcataagtttcataatgtctctaagtttaagtcatccataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgacaaa 27974621  T
Q  117 actattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatc 211  Q
    ||||   ||||||| ||||||||||||| |||||||||| | ||||||||||||||| || || |||| || || |||||| ||| |||| ||||    
T  27974622 actacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaatcctaaccggcatcgcaatcaccggcgtcggaatc 27974716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 28031791 - 28031985
Alignment:
Q  18 aacgcacaaaatcataagtttcataa-gtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaa 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||    
T  28031791 aacgcacaaaatcataagtttcataatgtctctaagtttaagtcatccataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgacaaa 28031890  T
Q  117 actattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatc 211  Q
    ||||   ||||||| ||||||||||||| |||||||||| | ||||||||||||||| || || |||| || || |||||| ||| |||| ||||    
T  28031891 actacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaatcctaaccggcatcgcaatcaccggcgtcggaatc 28031985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 8029404 - 8029578
Alignment:
Q  13 agatgaacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaa 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| |||||||    
T  8029404 agattaacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatcc-aaaaagcaagtttcacaagttcctaaaattgttaa 8029502  T
Q  113 taaaactattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgt 189  Q
    |||||||||  ||||||| ||||||||||||| || |||| |||| ||||||| |||||| |||||| |||| ||||    
T  8029503 taaaactatctaaaaaataaactagttaatttctt-aaaaagtcaacaaacactaccaccacaaccctaaccggcgt 8029578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 27869492 - 27869661
Alignment:
Q  18 aacgcacaaaatcataagtttcataa-gtctctaagtttaagtcatccataaaaccatccaaaaaag---caaggttcacaagttcgtaaagttgttaat 113  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    |||| ||||||||||| |||||||||||||    
T  27869492 aacgcacaaaatcataagtttcataaagtctctaagtttaagtcatctataaaaccatccaaaaaaaaaacaagtttcacaagttcctaaagttgttaat 27869591  T
Q  114 aaaactattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaacc 184  Q
    |||||||| | |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  27869592 aaaactat-ctaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaacc 27869661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 38 - 197
Target Start/End: Complemental strand, 24082723 - 24082564
Alignment:
Q  38 tcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactag 137  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||||| |||||||  ||||||| |||||     
T  24082723 tcataagtctctaagtttaagccatccataaaataatccaaaaaagcaagtttcacaagttcgtaaagttgttaattaaactatctaaaaaataaactac 24082624  T
Q  138 ttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatca 197  Q
    ||||||| |||| ||||||||||||||||||  |||||| ||  |||||| |||||||||    
T  24082623 ttaatttcttcagaaggtcatcaaacaccactgccgcaatccttaccagcatcacaatca 24082564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 6387457 - 6387559
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  6387457 aacgcacataattataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaagtttcacaagtttataaagttgttaataaaa 6387556  T
Q  118 cta 120  Q
    |||    
T  6387557 cta 6387559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 6387748 - 6387903
Alignment:
Q  112 ataaaactattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatc 211  Q
    |||||||||| |||||||| |||| | |||||| ||||||| |||||||||||||||||||||||||| ||||| | || |||||| ||| || ||||||    
T  6387748 ataaaactatccaaaaaataaactggctaatttcttcaaaaagtcatcaaacaccaccaccgcaaccctaaccaacatcgcaatcaccggcgttgcaatc 6387847  T
Q  212 agaatttaccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
     |||||| |||||||||||||||||||||||||  |||||||| || |||||||||    
T  6387848 ggaatttcccccatcgaaatcgcaaccctaactaatatgtgctctcatgttcatgg 6387903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 41394405 - 41394306
Alignment:
Q  21 gcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaacta 120  Q
    ||||||||||||||||||||||||||| |||  |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||    
T  41394405 gcacaaaatcataagtttcataagtctataaacttaagtcatccataaaaccatctaaaaaagcaagtttcacaagttcctaaagttgttaataaaacta 41394306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 3007408 - 3007524
Alignment:
Q  60 catccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtcatc 159  Q
    |||||||| ||||||||||||||  ||| || |||||||| |||||||||||||||||||||  ||||||| ||||||||||||| |||||| ||||| |    
T  3007408 catccatagaaccatccaaaaaaa-aagttttacaagttcataaagttgttaataaaactatataaaaaataaactagttaatttcttcaaatggtcaac 3007506  T
Q  160 aaacaccaccaccgcaac 177  Q
    ||||| ||||||||||||    
T  3007507 aaacaacaccaccgcaac 3007524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 33177496 - 33177560
Alignment:
Q  89 ttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    ||||||||||  |||||||||||||||| |||| |||||||| ||||||||||||| ||||||||    
T  33177496 ttcacaagtttttaaagttgttaataaacctatccaaaaaataaactagttaattttttcaaaag 33177560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 37131184 - 37131245
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaat 130  Q
    ||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||  |||||||    
T  37131184 aaccatccaaaaaggcaagtttcacaagttcctaaaattgttaataaaactataaaaaaaat 37131245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 35879885 - 35879824
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaat 130  Q
    ||||||||||||| ||||| |||||| |||| ||| |||||||||||||||||  |||||||    
T  35879885 aaccatccaaaaaggcaagtttcacacgttcctaacgttgttaataaaactatataaaaaat 35879824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 17234932 - 17234880
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    ||||||||||||| ||||| |||||||||||  |||||||||||| |||||||    
T  17234932 aaccatccaaaaaggcaagtttcacaagttcacaaagttgttaatcaaactat 17234880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 24067321 - 24067269
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    |||||| |||||| ||||| ||| ||||||| |||||||||||||||||||||    
T  24067321 aaccattcaaaaaggcaagtttctcaagttcctaaagttgttaataaaactat 24067269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 19484675 - 19484589
Alignment:
Q  71 ccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtca 157  Q
    |||||| |||||| ||| ||||||||||  |||| |||  ||||||||||| |||||||  |||||| |||||| ||| ||||||||    
T  19484675 ccatcccaaaaagaaagtttcacaagtttataaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtca 19484589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 4870784 - 4870837
Alignment:
Q  101 taaagttgttaataaaactattc-aaaaaatcaactagttaatttattcaaaag 153  Q
    ||||||||||||||||||||| | ||||||| ||||||||||||  ||||||||    
T  4870784 taaagttgttaataaaactatccaaaaaaataaactagttaattacttcaaaag 4870837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 7761006 - 7760961
Alignment:
Q  76 caaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    |||||| ||||| ||||||||||| || ||||||||||||||||||    
T  7761006 caaaaaggcaagtttcacaagttcctagagttgttaataaaactat 7760961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 24 - 267
Target Start/End: Original strand, 49236559 - 49236802
Alignment:
Q  24 caaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattc 123  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||||||||      
T  49236559 caaaatcataagtttcataagtccctaagtttaagccatccataaaaccatccaaaaaagaaagtttcataagttcctaaagttgttaataaaactatct 49236658  T
Q  124 aaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttacccc 223  Q
    ||||||| ||||||||||||| || ||||||||| |||| |||||||| ||||||  |||||||||  |||||||||  |||| |||| |||||| | ||    
T  49236659 aaaaaataaactagttaatttctttaaaaggtcaacaaataccaccacagcaaccataaccagcgttgcaatcatcgacgtcgaaatctgaattttcacc 49236758  T
Q  224 atcgaaatcgcaaccctaactggtatgtgctatcttgttcatgg 267  Q
     |||||||||||||||||| |||||||||||  | |||||||||    
T  49236759 gtcgaaatcgcaaccctaattggtatgtgctcccatgttcatgg 49236802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 47371125 - 47371361
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  47371125 aacgcacaaaattataagtttcataagtctataagtttaagtcatccataaaaccatccaaaaaagcaagtttcacaagttcttaaagttgttaataaaa 47371224  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatt 217  Q
    | ||  ||||||  ||||||||||||| |||||||||||| | ||||||||| || |||||| |||| || |  |||||| ||| |||| ||||  | ||    
T  47371225 caatctaaaaaacaaactagttaatttcttcaaaaggtcaacgaacaccaccgccacaaccctaaccggcattgcaatcaccggcgtcgaaatctaagtt 47371324  T
Q  218 taccccatcgaaatcgcaaccctaactggtatgtgct 254  Q
    | | || ||||||| |||||||||| |||||||||||    
T  47371325 tccaccgtcgaaattgcaaccctaattggtatgtgct 47371361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 49452616 - 49452851
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| ||||||||||||    
T  49452616 aacgcaccaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaa-caagtttcacaagttcctaaatttgttaataaaa 49452714  T
Q  118 ctattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatt 217  Q
    ||||  ||||||| ||||||||||||| ||||||| | || ||||||| ||||||||||||| |||| ||||| |||| | ||| |||| |||  || ||    
T  49452715 ctatctaaaaaataaactagttaatttcttcaaaacgacaacaaacactaccaccgcaaccctaaccggcgtcgcaataaacggcgtcgaaatatgactt 49452814  T
Q  218 taccccatcgaaatcgcaaccctaactggtatgtgct 254  Q
    | | || | | ||||||||||||||||||||| ||||    
T  49452815 tccaccgttggaatcgcaaccctaactggtatatgct 49452851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 28403534 - 28403707
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaag--caaggttcacaagttcgtaaagttgttaataa 115  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||| |||||||||||||||    
T  28403534 aacgcacaaaatcataattttcataagtctctaagtttaagtcatccataaaaccatccaaaaaaaatcaagtttcacaagttcctaaagttgttaataa 28403633  T
Q  116 aactattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgt 189  Q
    ||||||| ||||||| ||||||||||||| |||||||||||| |||||||||| ||||||| || |||| ||||    
T  28403634 aactatttaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccactaccgcaatcctaaccggcgt 28403707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 3593778 - 3593581
Alignment:
Q  21 gcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaacta 120  Q
    ||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  3593778 gcacacaatcataagtttcttaagtctctaagtttaagtcgttcataaaaccatccaaaaaagtaagtttcacaagtccgtaaagttgttaataaaacta 3593679  T
Q  121 ttcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaattt 218  Q
    |  ||||||| |||| |||||||| |||||||||| | ||||||||| ||||||||||| |||| | ||| ||||||| || |||| |||| ||||||    
T  3593678 tctaaaaaataaacttgttaatttcttcaaaaggtaaacaaacaccaacaccgcaaccctaaccggtgtcgcaatcattggcgtcgaaatctgaattt 3593581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 38 - 267
Target Start/End: Original strand, 42303956 - 42304186
Alignment:
Q  38 tcataagtctctaagtttaagtcatccataaaaccatccaaaaaa-gcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaacta 136  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||| ||||||| |||||||||||||  ||||||| || ||    
T  42303956 tcataagtctctaagtttaagccatccataaaaccatccaaaaaaagaaagtttcacaagttcctaaagttattaataaaactatctaaaaaataaagta 42304055  T
Q  137 gttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaa 236  Q
    |||||||| ||||||| |||| |||||||||||||  |||||| |||||| |||||||||| ||| || | |||  |||||| | || ||  |||| |||    
T  42304056 gttaatttcttcaaaacgtcaacaaacaccaccacaacaaccctaaccagtgtcacaatcaccggcgttgaaatatgaatttccaccgtctgaatcacaa 42304155  T
Q  237 ccctaactggtatgtgctatcttgttcatgg 267  Q
    |||||| |||||||||||  | |||||||||    
T  42304156 ccctaaatggtatgtgctcccctgttcatgg 42304186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 60 - 267
Target Start/End: Original strand, 32759699 - 32759906
Alignment:
Q  60 catccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtcatc 159  Q
    ||||||||||||||||||||||| |||| || ||||||||  ||| ||||||||||||||||  ||||||| ||||||||||||| |||||| ||||| |    
T  32759699 catccataaaaccatccaaaaaaccaagttttacaagttcaaaaaattgttaataaaactatctaaaaaataaactagttaatttcttcaaatggtcaac 32759798  T
Q  160 aaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaaccctaactggtatgtgctatctt 259  Q
    |||||||||| ||||||||| ||||   ||| |||||| ||| |||| |||| |||||| | || ||| ||||||||||||||||| ||||||||  |||    
T  32759799 aaacaccacccccgcaaccctaaccgatgtcgcaatcaccggcgtcgaaatctgaattttcaccgtcggaatcgcaaccctaactgatatgtgctccctt 32759898  T
Q  260 gttcatgg 267  Q
    ||||||||    
T  32759899 gttcatgg 32759906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 25254073 - 25253911
Alignment:
Q  20 cgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaact 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| | |||| ||| ||||||   ||||||||||||||||||    
T  25254073 cgcacaaaatcataagtttcataagtctctaagttcaagtcattcataaaaccatcaaaaataacaagtttctcaagtttccaaagttgttaataaaact 25253974  T
Q  120 attcaaaa---aatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccc 179  Q
    ||  ||||   ||| ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  25253973 atctaaaaaataataaactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccc 25253911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 19863399 - 19863276
Alignment:
Q  21 gcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaacta 120  Q
    |||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  19863399 gcacgaaatcataagtttcataaatccctaagtttaagtcatccataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaacta 19863300  T
Q  121 ttcaaaaaatcaactagttaattt 144  Q
    |  ||||||| ||||||| |||||    
T  19863299 tctaaaaaataaactagtaaattt 19863276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 35176842 - 35177056
Alignment:
Q  38 tcataagtctct-aagtttaagtcatccataaaaccatccaaaa-aagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaact 135  Q
    |||||||||||| |||||| ||||| |||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||  ||||| | || |    
T  35176842 tcataagtctcttaagttttagtcacccataaaaccatccaaaaaaagcaagtttcacaagttcataatgttgttaataaaactatctaaaaattaaatt 35176941  T
Q  136 agttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgca 235  Q
    ||| ||||| |||||||||||| |||||||||||| || ||||| |||| ||||| |||||| ||  |||| |||| |||||| | || ||| |||||||    
T  35176942 agtgaatttcttcaaaaggtcaacaaacaccaccaacgtaaccctaaccggcgtcgcaatcaccgacgtcgaaatctgaatttccaccgtcggaatcgca 35177041  T
Q  236 accctaactggtatg 250  Q
    ||||| |||||||||    
T  35177042 accctcactggtatg 35177056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 179
Target Start/End: Original strand, 48966072 - 48966222
Alignment:
Q  25 aaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaagg----ttcacaagttcgtaaagttgttaataaaacta 120  Q
    ||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||  ||||    ||||||| ||       | | |||||||||||    
T  48966072 aaaatcataagtttcataagtctttaagtttaagccatccataaa-ccatccaaaaaaaaaaggaagtttcacaattt-------tcgctaataaaacta 48966163  T
Q  121 ttcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccc 179  Q
    |  ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  48966164 tctaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccc 48966222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 46042383 - 46042298
Alignment:
Q  68 aaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    |||||||||||||||| ||| ||||||| ||  |||||||||||||||| |||| |||||||| |||||||||||||  |||||||    
T  46042383 aaaccatccaaaaaagtaagtttcacaattttctaaagttgttaataaacctatccaaaaaataaactagttaatttcgtcaaaag 46042298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 52182542 - 52182490
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  52182542 aaccatccaaaaaagtaagcttcacaagttcctaaagttgttaataaaactat 52182490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 226396 - 226321
Alignment:
Q  78 aaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    |||||||||| |||| |||||  |||||||||||||||| ||||  ||||||| ||||||||||||| ||||||||    
T  226396 aaaaagcaagtttcataagtttctaaagttgttaataaacctatctaaaaaataaactagttaattttttcaaaag 226321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 42637749 - 42637796
Alignment:
Q  68 aaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataa 115  Q
    |||||||||||||||||||| | ||||||||  |||||||||||||||    
T  42637749 aaaccatccaaaaaagcaagttgcacaagtttctaaagttgttaataa 42637796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 1242920 - 1243006
Alignment:
Q  71 ccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtca 157  Q
    |||||| |||||| ||| ||||||||||  |||| |||  ||||||||||| |||||||  |||||| |||||| ||| ||||||||    
T  1242920 ccatcccaaaaagaaagtttcacaagtttctaaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtca 1243006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 41353903 - 41353817
Alignment:
Q  71 ccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtca 157  Q
    |||||| |||||| ||| ||||||||||  |||| |||  ||||||||||| |||||||  |||||| |||||| ||| ||||||||    
T  41353903 ccatcccaaaaagaaagtttcacaagtttataaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtca 41353817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 29716461 - 29716683
Alignment:
Q  22 cacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||| ||||||| |||||||||||||    
T  29716461 cacaaaatcataagtttcataagtctctaagtttaagtcatccacaaaaccattcaaaaaagcaagttacacaagttcctaaagtttttaataaaactat 29716560  T
Q  122 tcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttacc 221  Q
      ||||||| ||||||||||||| |||||||||||| ||| ||||||||||| ||||| ||||  ||||  |||||||||||||| || | |||||| |     
T  29716561 ctaaaaaataaactagttaatttcttcaaaaggtcaacaagcaccaccaccgtaaccctaaccgacgtcgtaatcatcggtgtcgaaaactgaatttcca 29716660  T
Q  222 ccatcgaaatcgcaaccctaact 244  Q
    || ||||||||||||||||||||    
T  29716661 ccgtcgaaatcgcaaccctaact 29716683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 254
Target Start/End: Complemental strand, 34218934 - 34218740
Alignment:
Q  59 tcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtcat 158  Q
    |||||||||||| |||||||||| | ||  || |||||||| | |||||||| ||||||||||  | ||||| || |||||||||| |||||| | |||     
T  34218934 tcatccataaaatcatccaaaaatgtaacttttacaagttcttgaagttgttgataaaactatctagaaaataaattagttaatttcttcaaa-gatcaa 34218836  T
Q  159 caaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaaccctaactggtatgtgct 254  Q
    ||||||||||||||||||||| |||   ||||||||||| ||| |||| |||| |||||| | || ||| ||| ||||||||||||| ||||||||    
T  34218835 caaacaccaccaccgcaaccctaactgacgtcacaatcaccggcgtcgaaatctgaatttccaccgtcggaattgcaaccctaactgatatgtgct 34218740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 21490107 - 21490047
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaa 129  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||||    
T  21490107 aaccatccaaaaaggcaagtttcacaagttcttaaagttgttaataaaactattaaaaaaa 21490047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 31913883 - 31913806
Alignment:
Q  68 aaaccatccaaaaaag-caaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaattt 144  Q
    |||||||||||||||  |||| ||||||||||  |||||||||||||||| |||| |||||||| |||||||||||||    
T  31913883 aaaccatccaaaaaacacaagtttcacaagtttttaaagttgttaataaacctatccaaaaaataaactagttaattt 31913806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 36196017 - 36196069
Alignment:
Q  101 taaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  36196017 taaagttgttaataaaactatccaaaaaataaactagttaatttcttcaaaag 36196069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 15286133 - 15286185
Alignment:
Q  101 taaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||    
T  15286133 taaagttgttaataaaactatccaaaaaataaacaagttaatttcttcaaaag 15286185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 16497519 - 16497571
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||| ||||    
T  16497519 aaccatccaaaaaagcaagtttcacaagttgctaaagttgttaataaacctat 16497571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 5650412 - 5650498
Alignment:
Q  71 ccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtca 157  Q
    |||||| |||||||||| ||||||||||  |||| |||  |||||||||||  ||||||  || ||| |||||| ||||||||||||    
T  5650412 ccatcccaaaaagcaagtttcacaagtttctaaacttgagaataaaactatcaaaaaaacaaattaggtaatttcttcaaaaggtca 5650498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 33 - 254
Target Start/End: Complemental strand, 43172595 - 43172374
Alignment:
Q  33 aagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatca 132  Q
    ||||||| |||||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||| |    
T  43172595 aagtttcttaagtctctaagtttaagtcgttcacaaaaccatccaaaaaagcaagtttcacaagttcgtaaagttgttaataaaactatctaaaaaataa 43172496  T
Q  133 actagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatc 232  Q
    |||||||||||| |||||||||||| || |||||||||||||||||| |||| | ||| |||||||||| |||| |||| |||||| |  | ||  ||||    
T  43172495 actagttaatttcttcaaaaggtcaacagacaccaccaccgcaaccctaaccggtgtcgcaatcatcggcgtcgaaatctgaatttccatcgtcagaatc 43172396  T
Q  233 gcaaccctaactggtatgtgct 254  Q
    ||||||||||||||||||||||    
T  43172395 gcaaccctaactggtatgtgct 43172374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 23017525 - 23017367
Alignment:
Q  21 gcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaacta 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  23017525 gcacaaaatcataagtttcataagtctctaagtttaagtcattcataaaaccatccaaaaaagcaagtttcacaagtttctaaagttgttaataaaacta 23017426  T
Q  121 ttcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccc 179  Q
    |  ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  23017425 tctaaaaaataaactagttaattttttcaaaaggtcaacaaacaccaccaccgcaaccc 23017367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 21486681 - 21486508
Alignment:
Q  18 aacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  21486681 aacgcacaaaatcataagtttcataagtctctaagtttaagtcattcataaaactatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaa 21486582  T
Q  118 ctat-tcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtc 190  Q
    |||| | ||||||| ||||||||||||| |||||||||||| ||||||||||||| |||| || |||| |||||    
T  21486581 ctatctaaaaaaataaactagttaattttttcaaaaggtcaacaaacaccaccactgcaatcctaaccggcgtc 21486508  T

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Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 42611055 - 42610901
Alignment:
Q  21 gcacaaaatcata--agtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaac 118  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  42611055 gcacaaaatcatataagtttcataagtctctaagtttaagtaatccataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaac 42610956  T
Q  119 tattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccg 173  Q
     ||  ||||| |  |||||||||||| |||||||||||| |||||||||||||||    
T  42610955 catctaaaaactagactagttaattttttcaaaaggtcaacaaacaccaccaccg 42610901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 60 - 267
Target Start/End: Complemental strand, 16710040 - 16709833
Alignment:
Q  60 catccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtcatc 159  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||  ||||||| ||| ||||||||| |||||||||||| |    
T  16710040 catccataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataagactatctaaaaaataaacaagttaatttcttcaaaaggtcaac 16709941  T
Q  160 aaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaaccctaactggtatgtgctatctt 259  Q
    ||||| |||||||||||||| |||  | ||| |||||| ||  || | |||| |||||| | || ||| ||||||||||||||||||||||||||  | |    
T  16709940 aaacatcaccaccgcaaccctaactggtgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccct 16709841  T
Q  260 gttcatgg 267  Q
    ||||||||    
T  16709840 gttcatgg 16709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 60 - 267
Target Start/End: Complemental strand, 17684276 - 17684069
Alignment:
Q  60 catccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtcatc 159  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||  ||||||| ||| ||||||||| |||||||||||| |    
T  17684276 catccataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataagactatctaaaaaataaacaagttaatttcttcaaaaggtcaac 17684177  T
Q  160 aaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaaccctaactggtatgtgctatctt 259  Q
    ||||| |||||||||||||| |||  | ||| |||||| ||  || | |||| |||||| | || ||| ||||||||||||||||||||||||||  | |    
T  17684176 aaacatcaccaccgcaaccctaactggtgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccct 17684077  T
Q  260 gttcatgg 267  Q
    ||||||||    
T  17684076 gttcatgg 17684069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 94 - 265
Target Start/End: Original strand, 5771747 - 5771917
Alignment:
Q  94 aagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcaca 193  Q
    |||||||||||||| |||||||||||||  ||||||| |||| |||||||| ||||||||||||||||||||||||| |||||| | ||||||||||||     
T  5771747 aagttcgtaaagtttttaataaaactatcaaaaaaataaact-gttaatttcttcaaaaggtcatcaaacaccaccatcgcaactctaaccagcgtcacg 5771845  T
Q  194 atcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaaccctaactggtatgtgctatcttgttcat 265  Q
    |||| |||||| ||| ||||||||| |||  ||| ||||| |||||||||||||||||||| || |||||||    
T  5771846 atcaccggtgttgcagtcagaatttcccctgtcggaatcgtaaccctaactggtatgtgctctcatgttcat 5771917  T

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Target: chr7; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 31445885 - 31445777
Alignment:
Q  21 gcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaacta 120  Q
    |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  31445885 gcacaaaatcataagtttta-aagtctctaagtttaagccatccataaaaccatccaaaaatgcaagtttcacaagttcctaaagttgttaataaaacta 31445787  T
Q  121 ttcaaaaaat 130  Q
    |  |||||||    
T  31445786 tctaaaaaat 31445777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 6268941 - 6268856
Alignment:
Q  68 aaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    ||||||| ||||||| |||| ||||||||||  |||||||||||||||| |||||||| |||  ||||||||||||| ||||||||    
T  6268941 aaaccattcaaaaaaacaagtttcacaagtttctaaagttgttaataaacctattcaagaaacaaactagttaattttttcaaaag 6268856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 42043810 - 42043744
Alignment:
Q  60 catccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaa 127  Q
    ||||||||||||||||||||||||||| ||||||| |||  || |||||||||||||||||| |||||    
T  42043810 catccataaaaccatccaaaaaagcaa-gttcacatgtttctagagttgttaataaaactatccaaaa 42043744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 33496988 - 33497040
Alignment:
Q  69 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 121  Q
    ||||||||||||  ||||| ||||||||||| |||||||||||||||||||||    
T  33496988 aaccatccaaaatggcaagtttcacaagttcctaaagttgttaataaaactat 33497040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 4639513 - 4639599
Alignment:
Q  71 ccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtca 157  Q
    |||||| |||||| ||| ||||||||||  |||| |||  ||||||||||| |||||||  |||||| |||||| ||| ||||||||    
T  4639513 ccatcccaaaaagaaagtttcacaagtttataaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtca 4639599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 14741913 - 14741827
Alignment:
Q  71 ccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaaggtca 157  Q
    |||||| |||||| ||| ||||||||||  |||| |||  ||||||||||| |||||||  |||||| |||||| ||| ||||||||    
T  14741913 ccatcccaaaaagaaagtttcacaagtttctaaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggtca 14741827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 1254158 - 1254210
Alignment:
Q  101 taaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    |||||||||||||||| |||| |||||||| || |||||| ||| ||||||||    
T  1254158 taaagttgttaataaacctatccaaaaaataaattagttagtttcttcaaaag 1254210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 38 - 249
Target Start/End: Complemental strand, 9387 - 9176
Alignment:
Q  38 tcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactag 137  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  ||||||| ||||||    
T  9387 tcataagtctctaagtttaagtcattcataaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactatctaaaaaataaactag 9288  T
Q  138 ttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcagaatttaccccatcgaaatcgcaac 237  Q
    ||||||| ||||||||| || ||||||| |||||  |||||| |||| | ||| |||| | ||| || | |||  |||||| | || |||||||| ||||    
T  9287 ttaatttcttcaaaaggacaacaaacactaccacaacaaccctaaccggtgtcgcaataaacggcgttgaaatatgaatttccaccgtcgaaatcacaac 9188  T
Q  238 cctaactggtat 249  Q
    ||||||||||||    
T  9187 cctaactggtat 9176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 89826 - 89656
Alignment:
Q  21 gcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaat-aaaact 119  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||    
T  89826 gcacaaaatcataagtttcataagtctctaaatttaagccatccataaaaccatccaaaaaagaaagtttcacaagttcctaaagttgttaataaaaact 89727  T
Q  120 attcaaaaaatcaactagttaatttattcaaaaggtcatcaaacaccaccaccgcaaccccaaccagcgtc 190  Q
    ||  ||||||| ||||| ||||||| |||||||||||| |||| |||| ||| ||||||| |||| |||||    
T  89726 atctaaaaaataaactatttaatttcttcaaaaggtcaacaaagaccatcactgcaaccctaaccggcgtc 89656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 38294 - 38242
Alignment:
Q  101 taaagttgttaataaaactattcaaaaaatcaactagttaatttattcaaaag 153  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  38294 taaaattgttaataaaactattcaaaaaataaactagttaatttcttcaaaag 38242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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