View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_31 (Length: 452)

Name: NF11453A_low_31
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_31
NF11453A_low_31
[»] chr3 (14 HSPs)
chr3 (19-446)||(5484450-5484875)
chr3 (201-446)||(5525676-5525919)
chr3 (261-446)||(5828158-5828344)
chr3 (259-446)||(5502897-5503082)
chr3 (259-443)||(5490083-5490266)
chr3 (261-446)||(5454907-5455092)
chr3 (263-446)||(20343528-20343712)
chr3 (259-430)||(5446346-5446517)
chr3 (283-430)||(5854204-5854351)
chr3 (330-446)||(5848887-5849003)
chr3 (329-430)||(5802506-5802607)
chr3 (143-207)||(5525588-5525652)
chr3 (21-81)||(5525497-5525557)
chr3 (19-87)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (259-430)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 5484450 - 5484875
Alignment:
Q  19 caagtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagataaagaaggaaaaaagatctatagggaaaagtgaaaaga 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5484450 caagtttctcgtattctttatatgatctgtaggttgaagtaaatgtcattcaagaagcagataaagaaggaaaaaagatctacagggaaaagtgaaaaga 5484549  T
Q  119 gaattattaatgccgcgtaattttatgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484550 gaattattaatgccacgtaattttatgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 5484649  T
Q  219 ctattaattaaacagttaaggtatcagtaccagttctatcacacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgt 318  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5484650 ctattaattaaacagttaaggtatcagtaccag--ctatcacacaaatgatgaaataaataaatttgtgctatatatctgactgaagagataaaatatgt 5484747  T
Q  319 ctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaacca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||| |||||||||||||||||||||||||||||    
T  5484748 ctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatttcttgtcctacgtcaggatgttttctcatgtccacaatgttgccaaacca 5484847  T
Q  419 aagtaagcagccgctccccccatctctg 446  Q
    |||||||||||| ||||| |||||||||    
T  5484848 aagtaagcagccactcccaccatctctg 5484875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 201 - 446
Target Start/End: Original strand, 5525676 - 5525919
Alignment:
Q  201 atgttttgtaatcttttcctattaattaaacagttaaggtatcagtaccagttctatcacacaaatgatgaaataaataaatttgtgcaatatatctgac 300  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||||  |||| |||||||| ||    
T  5525676 atgttttgtaatctattcctattaattaaactgttaaggtagcagtgccagttctatcacacaaatgatgaaatatataaat--gtgctatatatctaac 5525773  T
Q  301 tgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtc 400  Q
    |||| ||  |||||||||  | |||| | |||||||||||||||||||||||||  |||||||||||||||||||||   |||||||| |||||||||||    
T  5525774 tgaaaaggaaaaatatgtgataggaagttaaaataccaagttctgaagatgccaatcgtatgtaaatgtcttgtcctacgtcaggatgttttctcatgtc 5525873  T
Q  401 cacaatgttgccaaaccaaagtaagcagccgctccccccatctctg 446  Q
    ||||||||||  |||||||||||||||||| ||||| |||||||||    
T  5525874 cacaatgttgttaaaccaaagtaagcagccactcccaccatctctg 5525919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 261 - 446
Target Start/End: Complemental strand, 5828344 - 5828158
Alignment:
Q  261 acaaatgatgaa-ataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgt 359  Q
    ||||||| |||| ||| |||||||||| | ||  |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||    
T  5828344 acaaatgctgaatatatataaatttgtcctatgcatctaactgaagaggtaaaatatgtctttggaaatgaaaataccaagttcggaagatgcgagtcgt 5828245  T
Q  360 atgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctccccccatctctg 446  Q
    ||||||||||||||||||   |||||||| ||||||||||||||||| |||  |||||||||||||||||| ||||| |||||||||    
T  5828244 atgtaaatgtcttgtcctacgtcaggatgttttctcatgtccacaatattgttaaaccaaagtaagcagccactcccaccatctctg 5828158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 259 - 446
Target Start/End: Original strand, 5502897 - 5503082
Alignment:
Q  259 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 358  Q
    ||||||||| |||||||  ||||||| |||  ||||||| ||||||  || |||||||||  | | |||||||||||||||| |||||||||||||||||    
T  5502897 acacaaatggtgaaatatgtaaatttatgc--tatatctaactgaaaggacaaaatatgtaatagcaaatgaaaataccaagctctgaagatgccagccg 5502994  T
Q  359 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctccccccatctctg 446  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||    
T  5502995 tatgtaaatgtcttgtccttggtctggatgttttctcatgtcgacaatgttgtcaaaccaaagtaagcagccactcccaccatctctg 5503082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 259 - 443
Target Start/End: Original strand, 5490083 - 5490266
Alignment:
Q  259 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 358  Q
    ||||||||| |||||||  ||||||| ||| |||||||| |||||| ||| |||||||||  |  ||||||||||||||||||||||||||||||| |||    
T  5490083 acacaaatggtgaaatat-taaatttatgctatatatctaactgaaaagacaaaatatgtaataagaaatgaaaataccaagttctgaagatgccatccg 5490181  T
Q  359 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctccccccatct 443  Q
    ||||||||||||||||||||| ||  |||| |||||||||||||||||||||  ||||||||||| |||||| ||||| ||||||    
T  5490182 tatgtaaatgtcttgtccttggtcttgatgttttctcatgtccacaatgttgttaaaccaaagtatgcagccactcccaccatct 5490266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 261 - 446
Target Start/End: Original strand, 5454907 - 5455092
Alignment:
Q  261 acaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgta 360  Q
    ||||||| ||||||| |||| ||| ||| |||||||| |||||| ||| |||||||||  |  |||| |||||||||||||||||||||||||| |||||    
T  5454907 acaaatggtgaaatatataagtttatgctatatatctaactgaaaagacaaaatatgtaataagaaaagaaaataccaagttctgaagatgccatccgta 5455006  T
Q  361 tgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctccccccatctctg 446  Q
    ||||||||||||||||||| ||  |||| |||||||||||||||||||||  ||||||||||| |||||| |||||  ||||||||    
T  5455007 tgtaaatgtcttgtccttggtcttgatgttttctcatgtccacaatgttgtgaaaccaaagtatgcagccactcccatcatctctg 5455092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 263 - 446
Target Start/End: Original strand, 20343528 - 20343712
Alignment:
Q  263 aaatgatgaaataaat-aaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtat 361  Q
    ||||| ||||||| || ||||||||||||||||||| |||| | ||  |||| ||||  | |||||||||||||||||||||||||||||| ||||||||    
T  20343528 aaatgctgaaatatatgaaatttgtgcaatatatctaactggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtat 20343627  T
Q  362 gtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctccccccatctctg 446  Q
     ||||||||||||||||| ||  |||| ||||||||||||| ||| ||| |||||||||||||||| || ||||| |||||||||    
T  20343628 ataaatgtcttgtccttggtctcgatgttttctcatgtccaaaatattgtcaaaccaaagtaagcaaccactcccaccatctctg 20343712  T

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Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 259 - 430
Target Start/End: Original strand, 5446346 - 5446517
Alignment:
Q  259 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 358  Q
    ||||||||| |||||||  ||||||| ||| |||||||| ||||||  || |||||||||  |   ||||||||||||||||||||||||||||||||||    
T  5446346 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccg 5446445  T
Q  359 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 430  Q
    ||||||||||||||||||||| ||  ||||  |||||||||| ||||||| | ||||||| |||||||||||    
T  5446446 tatgtaaatgtcttgtccttggtcttgatgtattctcatgtcaacaatgtcgtcaaaccagagtaagcagcc 5446517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 283 - 430
Target Start/End: Complemental strand, 5854351 - 5854204
Alignment:
Q  283 ttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatc 382  Q
    |||||| ||||||| ||||||| ||  |||| ||||  | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  5854351 ttgtgctatatatcagactgaaaaggcaaaagatgtaataggaaatgtaaataccaagttctgaagatgccagccgtatgaaaatgtcttgtccttggtc 5854252  T
Q  383 aggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 430  Q
     ||||| |||||||| || ||||||||| |||||||||||||||||||    
T  5854251 tggatgttttctcatatcaacaatgttgtcaaaccaaagtaagcagcc 5854204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 330 - 446
Target Start/End: Complemental strand, 5849003 - 5848887
Alignment:
Q  330 aaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagc 429  Q
    |||||||| |||||||||||||| || |||||||||||||||||||||   |||||||| |||||||||||||||||||||  |||||||||||||||||    
T  5849003 aaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtcctatgtcaggatgttttctcatgtccacaatgttgttaaaccaaagtaagcagc 5848904  T
Q  430 cgctccccccatctctg 446  Q
    | ||||| |||||||||    
T  5848903 cactcccaccatctctg 5848887  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 329 - 430
Target Start/End: Complemental strand, 5802607 - 5802506
Alignment:
Q  329 gaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcag 428  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||   || ||||| ||||||||||||| ||| |||  ||||||||||||||||    
T  5802607 gaaaataccaagttctgaagatgcgagtcgtatgtaaatgtcttgtcctacgtctggatgttttctcatgtccataatattgttaaaccaaagtaagcag 5802508  T
Q  429 cc 430  Q
    ||    
T  5802507 cc 5802506  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 5525588 - 5525652
Alignment:
Q  143 atgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgtttt 207  Q
    ||||||| ||| ||||  ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  5525588 atgttttgaacggtactcaattcctagaggttgattattttcagaagttggcatttatgtgtttt 5525652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 5525497 - 5525557
Alignment:
Q  21 agtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagata 81  Q
    |||| ||| |||||||| |||||||||  | |||||||||||||||||||| |||||||||    
T  5525497 agttcctcttattctttttatgatctgatggttgaagtaaatgtcagtcaacaagcagata 5525557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 20343322 - 20343390
Alignment:
Q  19 caagtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagataaagaag 87  Q
    |||||| ||| |||||||| |||||||||  | ||||| |||||||||||||| |||||| || |||||    
T  20343322 caagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatagaag 20343390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 259 - 430
Target Start/End: Complemental strand, 25809466 - 25809295
Alignment:
Q  259 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 358  Q
    ||||||||| |||||||  ||||||| ||| |||||||| ||||||  || |||||||||  |   ||||||||||||||||||||||||||||||||||    
T  25809466 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccg 25809367  T
Q  359 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 430  Q
    ||||||||||||||||||||| ||  ||||  |||||||||| ||||||| | ||||||| |||||||||||    
T  25809366 tatgtaaatgtcttgtccttggtcttgatgtattctcatgtcaacaatgtcgtcaaaccagagtaagcagcc 25809295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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