View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_310 (Length: 267)
Name: NF11453A_low_310
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_310 |
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| [»] scaffold0386 (2 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 2592 - 2410
Alignment:
| Q |
6 |
aacaaaactctgattacaactacattttaattagcaactaattcaccccccataaaattggaaaaagatgatatttcagattttcttcaacatagcttac |
105 |
Q |
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| T |
2592 |
aacaaaactctaattacaactacattttaattagcaagtaattcaccccccataaaattggaaaaagatgatatttcagattttcttcaacatagcttac |
2493 |
T |
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| Q |
106 |
aacattgaggaaagtctctctcaatacccccatgcaatagaatttgcattcctcacgatagcttaactgtgatccaaatctagt |
189 |
Q |
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| T |
2492 |
aacattgaggaaagtctctctcaatacccccatgcaataaaatttgcatt-ctcacgacagcttatctgtgatcgtaatctagt |
2410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 2375 - 2307
Alignment:
| Q |
187 |
agtaattgcagaaaaatggtcctctattaattctgttaacaaaccaatgctttatgctcacaatatatt |
255 |
Q |
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| T |
2375 |
agtaattgcacaaaaatggtcctgtattaattttggtaacaaaccaatgctttatgctcacaatatatt |
2307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 6076130 - 6075950
Alignment:
| Q |
6 |
aacaaaactctgattacaactacattttaatta-gcaactaattcaccccccataaaattggaaaaagatgatatttcagattttcttcaacatagctta |
104 |
Q |
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| T |
6076130 |
aacaaaactctaattaaaaatacgttttaattaagaaagtaattcaccctccataaaattg-aaaaagataatatttcagaatttcttcaacatagctta |
6076032 |
T |
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| Q |
105 |
caacattgaggaaagtctctctcaataccccc-atgcaatagaatttgcattcctcacgatagcttaactgtgatccaaatc |
185 |
Q |
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| T |
6076031 |
caacattggagaaagtccctttcattgccccccatgcaatagaatttgcattcctcacgatagcctaactgtgatccaaatc |
6075950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 6075888 - 6075831
Alignment:
| Q |
198 |
aaaaatggtcctctattaattctgttaacaaaccaatgctttatgctcacaatatatt |
255 |
Q |
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| T |
6075888 |
aaaaatggtcctctgttaattctggtaacaaaccaatgctttatgctcacaatatatt |
6075831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 5688920 - 5688993
Alignment:
| Q |
186 |
tagtaattg-cagaaaaatggtcctctattaattct---gttaacaaaccaatgctttatgctcacaatatatt |
255 |
Q |
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| T |
5688920 |
tagtaattggcacaaaaatggtcctctattaattcttctggtaacaaaccaatgctttatgctcacaatatatt |
5688993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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