View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_311 (Length: 267)
Name: NF11453A_low_311
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_311 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 31652086 - 31652340
Alignment:
| Q |
7 |
ccatcttcaactaaagatggtggcattaaagtagttcatggaaagtatgtactattagaccgctagaaaaatataatgcaccataaagttggatgattgt |
106 |
Q |
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| T |
31652086 |
ccatcttcaactaaagatggtggcattaaagtagttcatggaaagtatgtactattagaccgctagaaaaatataatgcaccataaagttggatgattgt |
31652185 |
T |
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| Q |
107 |
tttcttgtatcttatggtcttacttcttgaaatcaatgcaggactctcaccactccagttgcactaaccaaatgtttggaagccataaaagaatatgctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652186 |
tttcttgtatcttatggtcttacttcttgaaatcaatgcaggactctcaccactccagttgcactaaccaaatgtttggaagccataaaagaatatgctt |
31652285 |
T |
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| Q |
207 |
ttgtcaaatctgattttccagtgattctaactttagaagatcacctaacaccaaa |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652286 |
ttgtcaaatctgattttccagtgattctaactttagaagatcacctaacaccaaa |
31652340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 31702315 - 31702569
Alignment:
| Q |
7 |
ccatcttcaactaaagatggtggcattaaagtagttcatggaaagtatgtactattagaccgctagaaaaatataatgcaccataaagttggatgattgt |
106 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31702315 |
ccatcttcaactaaagatggtggtattaaagtagttcatggaaagtatgtactattagaccgctagaaaaatataatgcaccataaagttggatgattgt |
31702414 |
T |
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| Q |
107 |
tttcttgtatcttatggtcttacttcttgaaatcaatgcaggactctcaccactccagttgcactaaccaaatgtttggaagccataaaagaatatgctt |
206 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31702415 |
tttcttgtatcttatggtcttaattcttgaaatcaatgcaggactctcaccactccagttgcactaaccaaatgtttggaagccataaaagaatatgctt |
31702514 |
T |
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| Q |
207 |
ttgtcaaatctgattttccagtgattctaactttagaagatcacctaacaccaaa |
261 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31702515 |
ttgttaaatctgattttccagtgattctaactttagaagaccacctaacaccaaa |
31702569 |
T |
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