View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_315 (Length: 266)

Name: NF11453A_low_315
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_315
NF11453A_low_315
[»] chr7 (12 HSPs)
chr7 (25-208)||(31691181-31691352)
chr7 (82-121)||(42656459-42656498)
chr7 (126-156)||(22759066-22759096)
chr7 (126-156)||(27708934-27708964)
chr7 (126-156)||(28702639-28702669)
chr7 (82-115)||(2999141-2999174)
chr7 (84-121)||(28178913-28178950)
chr7 (82-136)||(12110292-12110343)
chr7 (128-156)||(25507248-25507276)
chr7 (126-154)||(31832193-31832221)
chr7 (82-114)||(39591554-39591586)
chr7 (126-154)||(39630264-39630292)
[»] chr2 (9 HSPs)
chr2 (83-124)||(33197327-33197368)
chr2 (126-162)||(6772695-6772731)
chr2 (82-121)||(17952788-17952827)
chr2 (82-121)||(31461382-31461421)
chr2 (82-121)||(32098395-32098434)
chr2 (82-129)||(40837515-40837562)
chr2 (127-156)||(10285758-10285787)
chr2 (82-114)||(29633023-29633055)
chr2 (82-114)||(33576681-33576713)
[»] chr8 (12 HSPs)
chr8 (82-156)||(26820112-26820182)
chr8 (82-156)||(12224986-12225057)
chr8 (126-162)||(31167861-31167897)
chr8 (82-121)||(14482146-14482185)
chr8 (82-121)||(31915356-31915395)
chr8 (82-121)||(39392748-39392787)
chr8 (80-114)||(29699205-29699239)
chr8 (82-114)||(8799356-8799388)
chr8 (82-114)||(11119086-11119118)
chr8 (128-156)||(12291784-12291812)
chr8 (82-114)||(40728505-40728537)
chr8 (80-120)||(44348432-44348472)
[»] chr5 (13 HSPs)
chr5 (82-115)||(10280663-10280696)
chr5 (82-121)||(7096214-7096253)
chr5 (82-121)||(37063161-37063200)
chr5 (126-156)||(14257347-14257377)
chr5 (126-156)||(30845203-30845233)
chr5 (82-115)||(10303751-10303784)
chr5 (82-115)||(14295456-14295489)
chr5 (82-115)||(28586853-28586886)
chr5 (82-115)||(35095870-35095903)
chr5 (126-155)||(36638644-36638673)
chr5 (82-114)||(29117017-29117049)
chr5 (83-115)||(29590828-29590860)
chr5 (82-114)||(35135749-35135781)
[»] chr1 (10 HSPs)
chr1 (82-115)||(39777613-39777646)
chr1 (126-162)||(6933117-6933153)
chr1 (82-156)||(14737792-14737871)
chr1 (126-156)||(32555705-32555735)
chr1 (82-124)||(46499941-46499983)
chr1 (126-156)||(48146173-48146203)
chr1 (83-121)||(50319236-50319274)
chr1 (82-114)||(15360845-15360877)
chr1 (82-114)||(36641826-36641858)
chr1 (82-114)||(49517021-49517053)
[»] chr3 (9 HSPs)
chr3 (82-156)||(20192693-20192764)
chr3 (82-122)||(49587003-49587043)
chr3 (82-121)||(1395615-1395654)
chr3 (83-121)||(905058-905096)
chr3 (126-156)||(4534499-4534529)
chr3 (126-156)||(20874458-20874488)
chr3 (126-155)||(8933670-8933699)
chr3 (82-114)||(26990685-26990717)
chr3 (82-114)||(54775079-54775111)
[»] scaffold0590 (1 HSPs)
scaffold0590 (82-121)||(1161-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (82-121)||(2775-2814)
[»] chr4 (10 HSPs)
chr4 (86-121)||(30338683-30338718)
chr4 (82-121)||(51044546-51044585)
chr4 (83-113)||(9319283-9319313)
chr4 (82-120)||(10192229-10192267)
chr4 (82-115)||(4071832-4071865)
chr4 (126-155)||(7730513-7730542)
chr4 (82-115)||(20936089-20936122)
chr4 (126-155)||(41162211-41162240)
chr4 (86-136)||(6364081-6364128)
chr4 (82-114)||(19422369-19422401)
[»] chr6 (5 HSPs)
chr6 (83-124)||(281936-281977)
chr6 (126-155)||(2023787-2023816)
chr6 (82-115)||(30865432-30865465)
chr6 (82-114)||(5328925-5328957)
chr6 (82-114)||(24836286-24836318)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 31691181 - 31691352
Alignment:
Q  25 ccacaagctttctagaatagattataaaaacaacttatagcgcatgtggaatcgaattttgactttattctatcttttgttatagaaataggttatagat 124  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||            ||||||||||||||||    
T  31691181 ccacaagctttctagaatagattataaaaacaacttatagctcatgtggaatcgaattttgactttgttcta------------gaaataggttatagat 31691268  T
Q  125 cataagtgcttaattaagttgtttatccaaaccgagtcatctaatattgtatatgcattattattgaggcattcttttgttaac 208  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31691269 cataagtgcttaattaagttgtttatccaaacagagtcatctaatattgtatatgcattattattgaggcattcttttgttaac 31691352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 42656498 - 42656459
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  42656498 tttgactttattttatcttttgttatagaaatagcttata 42656459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 22759096 - 22759066
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||||    
T  22759096 ataagtgcttaattaagttgtttatccaaac 22759066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Original strand, 27708934 - 27708964
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||||    
T  27708934 ataagtgcttaattaagttgtttatccaaac 27708964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 28702669 - 28702639
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||||    
T  28702669 ataagtgcttaattaagttgtttatccaaac 28702639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 2999174 - 2999141
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  2999174 tttgactttattttatcttttgttatagaaatag 2999141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 28178950 - 28178913
Alignment:
Q  84 tgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  28178950 tgactttattttatcttttgttatagaaatagcttata 28178913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 12110343 - 12110292
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagatcataagtgctta 136  Q
    |||||||||||| |||||| ||| |||||||||||||||   |||||||||||||    
T  12110343 tttgactttattttatcttgtgtaatagaaataggttat---tcataagtgctta 12110292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 25507276 - 25507248
Alignment:
Q  128 aagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||    
T  25507276 aagtgcttaattaagttgtttatccaaac 25507248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 31832221 - 31832193
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaa 154  Q
    |||||||||||||||||||||||||||||    
T  31832221 ataagtgcttaattaagttgtttatccaa 31832193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 39591554 - 39591586
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  39591554 tttgactttattttatcttttgttatagaaata 39591586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 39630292 - 39630264
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaa 154  Q
    |||||||||||||||||||||||||||||    
T  39630292 ataagtgcttaattaagttgtttatccaa 39630264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 33197327 - 33197368
Alignment:
Q  83 ttgactttattctatcttttgttatagaaataggttatagat 124  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  33197327 ttgactttattctatcttttgttatagaaatagcttatagat 33197368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 6772695 - 6772731
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaaccgagtc 162  Q
    ||||||||||||||||||||||||||||||| |||||    
T  6772695 ataagtgcttaattaagttgtttatccaaacagagtc 6772731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 17952788 - 17952827
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  17952788 tttgactttattttatcttttgttatagaaatagcttata 17952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 31461421 - 31461382
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  31461421 tttgactttattttatcttttgttatagaaatagcttata 31461382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 32098395 - 32098434
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  32098395 tttgactttattttatcttttgttatagaaatagcttata 32098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 40837515 - 40837562
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagatcataa 129  Q
    |||||||||| | ||||||||||||||||||||| ||||| |||||||    
T  40837515 tttgactttaatttatcttttgttatagaaatagcttatacatcataa 40837562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 10285787 - 10285758
Alignment:
Q  127 taagtgcttaattaagttgtttatccaaac 156  Q
    ||||||||||||||||||||||||||||||    
T  10285787 taagtgcttaattaagttgtttatccaaac 10285758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 29633055 - 29633023
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||||||| ||||||||||||||||    
T  29633055 tttgactttattctattttttgttatagaaata 29633023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 33576681 - 33576713
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  33576681 tttgactttattgtatcttttgttatagaaata 33576713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 26820182 - 26820112
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagatcataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||| ||||||||||||||||||||  |||||     |||| |||||||| ||||||||||||||||    
T  26820182 tttgactttattttatcttttgttatagaaataacttata----ctaagcgcttaattgagttgtttatccaaac 26820112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 12224986 - 12225057
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagatcataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||| ||||||||||  ||||||||  |||||   ||||||  ||||||||||||||||||||||||    
T  12224986 tttgactttattttatcttttgtcttagaaataacttata---cataagctcttaattaagttgtttatccaaac 12225057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 31167897 - 31167861
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaaccgagtc 162  Q
    ||||||||||||||||||||||||||||||| |||||    
T  31167897 ataagtgcttaattaagttgtttatccaaacagagtc 31167861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 14482185 - 14482146
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  14482185 tttgactttattttatcttttgttatagaaatagtttata 14482146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 31915356 - 31915395
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  31915356 tttgactttattctatcttttgttatagatatagcttata 31915395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 39392748 - 39392787
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  39392748 tttgactttattttatcttttgttatagaaatagtttata 39392787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 29699239 - 29699205
Alignment:
Q  80 attttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||||| ||||||||||||||||||||    
T  29699239 attttgactttattttatcttttgttatagaaata 29699205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 8799388 - 8799356
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  8799388 tttgactttattttatcttttgttatagaaata 8799356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 11119086 - 11119118
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  11119086 tttgactttattttatcttttgttatagaaata 11119118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 156
Target Start/End: Original strand, 12291784 - 12291812
Alignment:
Q  128 aagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||    
T  12291784 aagtgcttaattaagttgtttatccaaac 12291812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 40728505 - 40728537
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  40728505 tttgactttattttatcttttgttatagaaata 40728537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 44348472 - 44348432
Alignment:
Q  80 attttgactttattctatcttttgttatagaaataggttat 120  Q
    ||||||||||||||  |||||||||||||||||||| ||||    
T  44348472 attttgactttattacatcttttgttatagaaatagcttat 44348432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 10280663 - 10280696
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    ||||||||||||||||||||||||||||||||||    
T  10280663 tttgactttattctatcttttgttatagaaatag 10280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 7096214 - 7096253
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  7096214 tttgactttattttatcttttgttatagaaatagcttata 7096253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 37063161 - 37063200
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  37063161 tttgactttattttatcttttgttatagaaatagtttata 37063200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 14257377 - 14257347
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||||    
T  14257377 ataagtgcttaattaagttgtttatccaaac 14257347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 30845233 - 30845203
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||||    
T  30845233 ataagtgcttaattaagttgtttatccaaac 30845203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 10303784 - 10303751
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  10303784 tttgactttattttatcttttgttatagaaatag 10303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 14295489 - 14295456
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  14295489 tttgactttattttatcttttgttatagaaatag 14295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 28586853 - 28586886
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  28586853 tttgactttattttatcttttgttatagaaatag 28586886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 35095870 - 35095903
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  35095870 tttgactttattttatcttttgttatagaaatag 35095903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 36638673 - 36638644
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaa 155  Q
    ||||||||||||||||||||||||||||||    
T  36638673 ataagtgcttaattaagttgtttatccaaa 36638644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 29117017 - 29117049
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  29117017 tttgactttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 29590828 - 29590860
Alignment:
Q  83 ttgactttattctatcttttgttatagaaatag 115  Q
    ||||||||||| |||||||||||||||||||||    
T  29590828 ttgactttattttatcttttgttatagaaatag 29590860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 35135749 - 35135781
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  35135749 tttgactttattttatcttttgttatagaaata 35135781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 39777646 - 39777613
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    ||||||||||||||||||||||||||||||||||    
T  39777646 tttgactttattctatcttttgttatagaaatag 39777613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 6933117 - 6933153
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaaccgagtc 162  Q
    ||||||||||||||||||||||||||||||| |||||    
T  6933117 ataagtgcttaattaagttgtttatccaaacagagtc 6933153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 14737792 - 14737871
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggtt-----atagatcataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||| ||||||||||||||||||||  ||     ||| || ||||||||||||||||| || ||||||||||    
T  14737792 tttgactttattttatcttttgttatagaaataacttagcacatatatgataagtgcttaattaagctgcttatccaaac 14737871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 32555735 - 32555705
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||||    
T  32555735 ataagtgcttaattaagttgtttatccaaac 32555705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 46499941 - 46499983
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagat 124  Q
    |||||||||||| |||||||| |||||||||||| ||||||||    
T  46499941 tttgactttattttatcttttcttatagaaatagcttatagat 46499983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Original strand, 48146173 - 48146203
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||||    
T  48146173 ataagtgcttaattaagttgtttatccaaac 48146203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 50319274 - 50319236
Alignment:
Q  83 ttgactttattctatcttttgttatagaaataggttata 121  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  50319274 ttgactttattttatcttttgttatagaaatagcttata 50319236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 15360877 - 15360845
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  15360877 tttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 36641858 - 36641826
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  36641858 tttgactttattttatcttttgttatagaaata 36641826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 49517053 - 49517021
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  49517053 tttgactttattttatcttttgttatagaaata 49517021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 20192693 - 20192764
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatagatcataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||| |||||||||||||| |||||| |||||   ||||||  ||||||| || |||||||||||||    
T  20192693 tttgactttattttatcttttgttatataaatagcttata---cataagcacttaattgagctgtttatccaaac 20192764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 49587003 - 49587043
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttatag 122  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  49587003 tttgactttattttatcttttgttatagaaatagcttatag 49587043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 1395654 - 1395615
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  1395654 tttgactttattttatcttttgttatagaaatagcttata 1395615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 905058 - 905096
Alignment:
Q  83 ttgactttattctatcttttgttatagaaataggttata 121  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  905058 ttgactttattttatcttttgttatagaaatagcttata 905096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Original strand, 4534499 - 4534529
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||||    
T  4534499 ataagtgcttaattaagttgtttatccaaac 4534529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Original strand, 20874458 - 20874488
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaac 156  Q
    |||||||||||||||||||||||||||||||    
T  20874458 ataagtgcttaattaagttgtttatccaaac 20874488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 8933699 - 8933670
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaa 155  Q
    ||||||||||||||||||||||||||||||    
T  8933699 ataagtgcttaattaagttgtttatccaaa 8933670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 26990717 - 26990685
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  26990717 tttgactttattttatcttttgttatagaaata 26990685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 54775111 - 54775079
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  54775111 tttgactttattttatcttttgttatagaaata 54775079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 1161 - 1200
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  1161 tttgactttattttatcttttgttatagaaatagcttata 1200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 2814 - 2775
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  2814 tttgactttattttatcttttgttatagaaatagcttata 2775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 30338683 - 30338718
Alignment:
Q  86 actttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||||||||||||||||||||| |||||    
T  30338683 actttattctatcttttgttatagaaatagtttata 30338718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 51044546 - 51044585
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttata 121  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  51044546 tttgactttattttatcttttgttatagaaatagcttata 51044585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 9319283 - 9319313
Alignment:
Q  83 ttgactttattctatcttttgttatagaaat 113  Q
    |||||||||||||||||||||||||||||||    
T  9319283 ttgactttattctatcttttgttatagaaat 9319313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 10192267 - 10192229
Alignment:
Q  82 tttgactttattctatcttttgttatagaaataggttat 120  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  10192267 tttgactttattctatcttttgttataaaaatagtttat 10192229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 4071865 - 4071832
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  4071865 tttgactttattttatcttttgttatagaaatag 4071832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 7730542 - 7730513
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaa 155  Q
    ||||||||||||||||||||||||||||||    
T  7730542 ataagtgcttaattaagttgtttatccaaa 7730513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 20936089 - 20936122
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  20936089 tttgactttattttatcttttgttatagaaatag 20936122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 41162211 - 41162240
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaa 155  Q
    ||||||||||||||||||||||||||||||    
T  41162211 ataagtgcttaattaagttgtttatccaaa 41162240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 6364128 - 6364081
Alignment:
Q  86 actttattctatcttttgttatagaaataggttatagatcataagtgctta 136  Q
    |||||||| ||||||||||||||||||||| |||||   ||||||||||||    
T  6364128 actttattttatcttttgttatagaaatagcttata---cataagtgctta 6364081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 19422401 - 19422369
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  19422401 tttgactttattatatcttttgttatagaaata 19422369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 281936 - 281977
Alignment:
Q  83 ttgactttattctatcttttgttatagaaataggttatagat 124  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||    
T  281936 ttgactttattttatcttttgttataggaatagcttatagat 281977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 2023787 - 2023816
Alignment:
Q  126 ataagtgcttaattaagttgtttatccaaa 155  Q
    ||||||||||||||||||||||||||||||    
T  2023787 ataagtgcttaattaagttgtttatccaaa 2023816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 30865465 - 30865432
Alignment:
Q  82 tttgactttattctatcttttgttatagaaatag 115  Q
    |||||||||||| |||||||||||||||||||||    
T  30865465 tttgactttattttatcttttgttatagaaatag 30865432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 5328957 - 5328925
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  5328957 tttgactttattttatcttttgttatagaaata 5328925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 24836286 - 24836318
Alignment:
Q  82 tttgactttattctatcttttgttatagaaata 114  Q
    |||||||||||| ||||||||||||||||||||    
T  24836286 tttgactttattttatcttttgttatagaaata 24836318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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