View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_317 (Length: 265)
Name: NF11453A_low_317
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_317 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 41311267 - 41311027
Alignment:
| Q |
1 |
gagttgggtcgttcttgaatggttctattcattgtctgagttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacact |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311267 |
gagttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacact |
41311168 |
T |
|
| Q |
101 |
gtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311167 |
gtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggag |
41311068 |
T |
|
| Q |
201 |
atgcctacacttaagatatgggtgatgcaagaatacacaat |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
41311067 |
atgcctacacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 43164945 - 43164710
Alignment:
| Q |
1 |
gagttgggtcgttcttgaatggttctattcattgtctgagttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacact |
100 |
Q |
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|||| ||||||||||||||||||||||||||||| ||| |||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| | |
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| T |
43164945 |
gagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaat |
43164846 |
T |
|
| Q |
101 |
gtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggag |
200 |
Q |
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|||||||| |||||| ||||||| |||||||||||||| ||| | | ||||||||||| ||||| || || ||||||| || ||||||||||||||| |
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| T |
43164845 |
gtcagagattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggag |
43164746 |
T |
|
| Q |
201 |
atgcctacacttaagatatgggtgatgcaagaatac |
236 |
Q |
| |
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||| ||||||||||||||||||| |||||||||||| |
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| T |
43164745 |
atgtctacacttaagatatgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 30165660 - 30165883
Alignment:
| Q |
1 |
gagttgggtcgttcttgaatggttctattcattgtctgagttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacact |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| |||| || || ||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
30165660 |
gagttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaat |
30165759 |
T |
|
| Q |
101 |
gtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggag |
200 |
Q |
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| T |
30165760 |
ggcagagatagctcttccaaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggag |
30165847 |
T |
|
| Q |
201 |
atgcctacacttaagatatgggtgatgcaagaatac |
236 |
Q |
| |
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| | ||||| |||||||||||||||||||||||||| |
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| T |
30165848 |
aggtctacagttaagatatgggtgatgcaagaatac |
30165883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 30125221 - 30124981
Alignment:
| Q |
1 |
gagttgggtcgttcttgaatggttctattcattgtctgagttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacact |
100 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| ||| | || || || |||| | | |||||||||| |||||||||||||||||||| |||| | |
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| T |
30125221 |
gagttgggttgttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaat |
30125122 |
T |
|
| Q |
101 |
gtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggag |
200 |
Q |
| |
|
|||||| | ||||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | ||| |
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| T |
30125121 |
gtcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgag |
30125022 |
T |
|
| Q |
201 |
atgcctacacttaagatatgggtgatgcaagaatacacaat |
241 |
Q |
| |
|
||| | || |||||||| |||||||||| |||||| |||| |
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| T |
30125021 |
atggatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
23 |
ttctattcattgtctgagttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
122 |
Q |
| |
|
|||||||||||| ||| |||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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|
| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
123 |
ggtttttatagtgatt |
138 |
Q |
| |
|
| ||||||||| |||| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 30131175 - 30131068
Alignment:
| Q |
1 |
gagttgggtcgttcttgaatggttctattcattgtctgagttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacact |
100 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||| ||| |||| || || |||| || |||||||||||| |||||| ||||||||||||||||| | |
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| T |
30131175 |
gagtcgggttgttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaat |
30131076 |
T |
|
| Q |
101 |
gtcagaga |
108 |
Q |
| |
|
|||||||| |
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|
| T |
30131075 |
gtcagaga |
30131068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 30120174 - 30120068
Alignment:
| Q |
2 |
agttgggtcgttcttgaatggttctattcattgtctgagttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactg |
101 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| || | || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | |
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|
| T |
30120174 |
agttgggttgttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaata |
30120075 |
T |
|
| Q |
102 |
tcagaga |
108 |
Q |
| |
|
||||||| |
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|
| T |
30120074 |
tcagaga |
30120068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
206 |
tacacttaagatatgggtgatgcaagaatacaca |
239 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
62 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
123 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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|
| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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