View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_32 (Length: 451)
Name: NF11453A_low_32
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_32 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 13 - 451
Target Start/End: Original strand, 41785410 - 41785848
Alignment:
| Q |
13 |
gaaaatggaagaattggcagaaaagttgaggaagaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgag |
112 |
Q |
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| T |
41785410 |
gaaaatggaagaattggcagaaaagttgaggaagaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgag |
41785509 |
T |
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| Q |
113 |
aacaaaagcagttgcaaattaacaaagataaggtacgaggaagagaacaagattcttggggagaaagtttctatttatgaagaggaactaagaaggctta |
212 |
Q |
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| T |
41785510 |
aacaaaagcagttgcaaattaacaaagataaggtacgaggaagagaacaagattcttggggagaaagtttctatttatgaagaggaactaagaaggctta |
41785609 |
T |
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| Q |
213 |
aagagggtgctgctaatgttactgcaactgcaagtgaggaaacacactcaccagtggttgatctaaagggttttgaatttgatgctgctctaaatggatt |
312 |
Q |
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| T |
41785610 |
aagagggtgctgctaatgttactgcaaatgcaagtgaggaaacacactcaccagtggttgatctaaagggttttgaatttgatgctgctctaaatggatt |
41785709 |
T |
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| Q |
313 |
agatgtagtggctgcaaaagtcgaggaacacagagagtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagattgcgaaggattggataaag |
412 |
Q |
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| T |
41785710 |
agatgtagtggctgcgaaagtcgaggaacacagagagtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagtttgcgaaggattggataaag |
41785809 |
T |
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| Q |
413 |
aaaatgaacgtcgaaatgaaacaattgaaggaaaatgtg |
451 |
Q |
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| T |
41785810 |
aaaatgaacgtcgaaatgaaacaattgaaggaaaatgtg |
41785848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 10834629 - 10834795
Alignment:
| Q |
13 |
gaaaatggaagaattggcagaaaagttgaggaagaaaatggaagacaatatccg-cttgttgcaccagaggatccacgtagcagaacaattgaacaatga |
111 |
Q |
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| T |
10834629 |
gaaaatggaagaattggcaggagattttagatagagaatggaaaacaatatagggcttgttgcactagaggatccatttggcagaacagctgaacaatga |
10834728 |
T |
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| Q |
112 |
gaacaaaagcagttgcaaattaacaaagataaggtacgaggaagagaacaagattcttggggagaaa |
178 |
Q |
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| T |
10834729 |
aaacaaaaacagttgcaaattaacaaagttaaggtatgagcaagagaacaagattctgggagagaaa |
10834795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 420
Target Start/End: Original strand, 10835068 - 10835178
Alignment:
| Q |
304 |
aaatggattagatgtagtggctgcaaaagtcgaggaacacagagagtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagattgcgaaggat |
403 |
Q |
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||||||||||||||||| |||||||||| ||||||||| || |||||||||||||| ||| ||||||| || |||||||| | |||| |||||| |
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| T |
10835068 |
aaatggattagatgtagcaactgcaaaagttgaggaacac--agtgtgtgtcatgagcagtgtttctaaaa----ttctgaggttcggtttgctaaggat |
10835161 |
T |
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| Q |
404 |
tggataaagaaaatgaa |
420 |
Q |
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| T |
10835162 |
aggataaagaaaatgaa |
10835178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 2281576 - 2281450
Alignment:
| Q |
45 |
agaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgagaacaaaagcagttgcaaattaacaaagataag |
144 |
Q |
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| T |
2281576 |
agaaaatggaagataatatacatatattgcatcggaggatccacgtagcagaacaactgaataacgaaaacaaacacagttacaaattgacaaagcaaaa |
2281477 |
T |
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| Q |
145 |
gtacgaggaagagaacaagattcttgg |
171 |
Q |
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||| |||||||||||||| || ||||| |
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| T |
2281476 |
gtatgaggaagagaacaaaatgcttgg |
2281450 |
T |
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