View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_321 (Length: 264)
Name: NF11453A_low_321
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_321 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 48993753 - 48993496
Alignment:
| Q |
1 |
atagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaacaattcaacttatcagccaacacaacaactccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48993753 |
atagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaa |
48993654 |
T |
|
| Q |
101 |
ttcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993653 |
ttcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccc |
48993554 |
T |
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| Q |
201 |
tagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993553 |
tagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtc |
48993496 |
T |
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Back To:
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Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 22623977 - 22624233
Alignment:
| Q |
1 |
atagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaacaattcaacttatcagccaacacaacaactccaa |
100 |
Q |
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|||||||| |||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||| |||| | ||||| | ||| |||||| |||| |
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| T |
22623977 |
atagcactaggtgatgtgtactgcaacaaaagcacaaatctaaacatagcatcattttcgaccaagaaatttagcttattcgacaaagcaacaatcccaa |
22624076 |
T |
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| Q |
101 |
ttcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccc |
200 |
Q |
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| || | |||||| ||||||| ||||||||||||| || ||||| |||||| ||| ||||||| | || ||||||||||||||||| ||||||||||| |
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| T |
22624077 |
taccaagaacaggtagcaccaagagtcttgccacaacaataccaatagtagttctaagtccaagtctagactcatttggtccttcagcaagcataccccc |
22624176 |
T |
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| Q |
201 |
tagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgt |
257 |
Q |
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|| ||||||||||||| |||||||||||||||| | ||||| || ||||||||||| |
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| T |
22624177 |
taatataagcatcacagaaggcaccattgcaccacctaaaatctctaaactatctgt |
22624233 |
T |
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