View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_324 (Length: 263)
Name: NF11453A_low_324
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_324 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8349000 - 8348795
Alignment:
| Q |
1 |
agtttgcatccactgcaagtagggcaatgtataaatttcttggctagtctagagctttgctagttttggatggtttttacttattattgcctactacaca |
100 |
Q |
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| T |
8349000 |
agtttgcatccactacaagaagggaaaggtataaatttcttggctagtctacagctttgctagttttggatggtttttacttattattgcctactacaca |
8348901 |
T |
|
| Q |
101 |
--ttctcttaattaagctatagtttttaatatttgatttgtgagcttatagctctgcatagagaaagcaaattcctgggttttgctatggaattgacttt |
198 |
Q |
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| T |
8348900 |
cattctcttaattaagctatagtttttaatatttgatttgtgagcttatagctctgcatagagaaagcaaattcctgggttttgctatggaattgacttt |
8348801 |
T |
|
| Q |
199 |
tagaag |
204 |
Q |
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|||||| |
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| T |
8348800 |
tagaag |
8348795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 215
Target Start/End: Complemental strand, 8355000 - 8354820
Alignment:
| Q |
35 |
atttcttggctagtctagagctttgctagttttggatggtttttacttattattgcctactacacattctcttaattaagctatagtttttaatatttga |
134 |
Q |
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| T |
8355000 |
atttcttggctactcaatagttttgctagttttggctggtttttacttattattgcttactacacattctcttaactaagctatagtttttaatatttga |
8354901 |
T |
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| Q |
135 |
tttgtgagcttatagctctgcatagagaaagcaaattcctgggttttgctatggaattgacttttagaagtaggttacttt |
215 |
Q |
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| T |
8354900 |
tttgtgagcttatagctccgcatagagaaagaaaattgctggtttttggaatggaattggcttttagaggaaggttacttt |
8354820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 8410695 - 8410525
Alignment:
| Q |
35 |
atttcttggctagtctagagctttgctagttttggatggtttttacttatta-------ttgccta------ctacacattctcttaattaagctatagt |
121 |
Q |
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| T |
8410695 |
atttcttggctactctataactttgctagttttggctggtttttacttattaattattattgcctatagctactacacattctcttaattaagatatagt |
8410596 |
T |
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| Q |
122 |
ttttaatatttgatttgtgagcttatagctctgcatagagaaagcaaattcctgggttttgctatggaattg |
193 |
Q |
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| T |
8410595 |
ttttaatgtttgatttgtgagc-tatagctctgcatagagaaagcgaattgctggatttgggtatggaattg |
8410525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 8361487 - 8361416
Alignment:
| Q |
176 |
ggttttgctatggaattgacttttagaagtaggttacttttctatgtcttgtccttacaggtgcaactttcc |
247 |
Q |
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| T |
8361487 |
ggttttggtatggagttggcttttagatgtaggtttcctttctatgtcttgtccttatatgtgcaactttcc |
8361416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 30938628 - 30938593
Alignment:
| Q |
186 |
tggaattgacttttagaagtaggttacttttctatg |
221 |
Q |
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| T |
30938628 |
tggaattgacttttagaggtaggttacttttctatg |
30938593 |
T |
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