View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_331 (Length: 261)
Name: NF11453A_low_331
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_331 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 20816300 - 20816554
Alignment:
| Q |
7 |
aatatccaatgaagtttcaattcggggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggattttt |
106 |
Q |
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| T |
20816300 |
aatatccaatgaagttgcaattcggggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggattttt |
20816399 |
T |
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| Q |
107 |
gagccagctccacctccagttagagagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcgatggtatag |
206 |
Q |
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| T |
20816400 |
gagccagctccacctccagttagagagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcaatggtatag |
20816499 |
T |
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| Q |
207 |
tctatgttgttgaccctggattggctaagcagaaggtttataaccctcgagctcg |
261 |
Q |
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| T |
20816500 |
tctatgttgttgaccctggattggctaagcagaaggtttataaccctcgagctcg |
20816554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 31 - 257
Target Start/End: Complemental strand, 38779821 - 38779595
Alignment:
| Q |
31 |
gggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggatttttgagccagctccacctccagttaga |
130 |
Q |
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| T |
38779821 |
gggggaccaggtgggccctgtgaaagccgtgccattatattctactcttcccccagctatgcaacagaagatttttgagccagctccacctccagttaag |
38779722 |
T |
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| Q |
131 |
gagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcgatggtatagtctatgttgttgaccctggattgg |
230 |
Q |
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| T |
38779721 |
gagggaggcccccctggaaggaagattgtggtatcaacaaacatagcagaaacttccttgacaattgatggtatagtctatgttattgatcctggatttg |
38779622 |
T |
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| Q |
231 |
ctaagcagaaggtttataaccctcgag |
257 |
Q |
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| T |
38779621 |
ctaagcagaaggtctataaccctcgag |
38779595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 40 - 249
Target Start/End: Complemental strand, 33388771 - 33388562
Alignment:
| Q |
40 |
ggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggatttttgagccagctccacctccagttagagagggaggc |
139 |
Q |
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| T |
33388771 |
ggtgggccctgtgaaagtgttatcactgtattctacccttcccccagctatgcagcagaagatttttgagccagctccgcctccagttaaggagggaggc |
33388672 |
T |
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| Q |
140 |
cttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcgatggtatagtctatgttgttgaccctggattggctaagcaga |
239 |
Q |
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|| |||||||| |||||| |||||||||||||||||||||||||||| ||||| || ||||||||||| |||||| ||||||||||||| || ||||||| |
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| T |
33388671 |
ctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagtatatgttattgaccctggatttgccaagcaga |
33388572 |
T |
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| Q |
240 |
aggtttataa |
249 |
Q |
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|||||||||| |
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| T |
33388571 |
aggtttataa |
33388562 |
T |
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