View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_336 (Length: 261)
Name: NF11453A_low_336
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_336 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 48399717 - 48399477
Alignment:
| Q |
15 |
tataaattttctggtttcaattttggtcccttcttttcttttccttttatataaaagttcatgtttcgtgtttgaaacgacnnnnnnnatgacataacat |
114 |
Q |
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| T |
48399717 |
tataaattttctgatttcaattttggtctcttcttttcttttccttttatataaaagttcatgtttcgtgtttgaaacgactttttttatgacataacat |
48399618 |
T |
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| Q |
115 |
ataaaactttaaaatatcattagttaaataatttaaccataatttcaaataaaagatcaaaatggtaaaacttgaggttacaagtcgattccatctaggc |
214 |
Q |
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| T |
48399617 |
ataagactttaaaatatcattagttaaataatttaaccataatttcaaataaaagatcaaaatggtaaaacttgaggttacaagtcgattccatctaggc |
48399518 |
T |
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| Q |
215 |
aaaataagttgaggtaaaaactcaaatttgattgtttggag |
255 |
Q |
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| T |
48399517 |
aaaataagttgaggtaaaaactcaaatttgattgcttggag |
48399477 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 42111604 - 42111640
Alignment:
| Q |
115 |
ataaaactttaaaatatcattagttaaataatttaac |
151 |
Q |
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| T |
42111604 |
ataagactttaaaatatcattagtttaataatttaac |
42111640 |
T |
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