View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_34 (Length: 447)
Name: NF11453A_low_34
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_34 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 21 - 447
Target Start/End: Original strand, 38566857 - 38567283
Alignment:
| Q |
21 |
atcttatttcttcaatcgttgctccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
120 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38566857 |
atcttatctcttcaatcgttgctccatctttaccatatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
38566956 |
T |
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| Q |
121 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataatt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38566957 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaactgataatt |
38567056 |
T |
|
| Q |
221 |
gtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567057 |
gtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccg |
38567156 |
T |
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| Q |
321 |
gataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567157 |
gataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
38567256 |
T |
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| Q |
421 |
tgtctcaaacattttgtaagccgccgc |
447 |
Q |
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| T |
38567257 |
tgtctcaaacattttgtaagccgccgc |
38567283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 21 - 447
Target Start/End: Original strand, 38525732 - 38526158
Alignment:
| Q |
21 |
atcttatttcttcaatcgttgctccatctttaccgtatgaaatgttatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaatttt |
120 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
38525732 |
atcttatttcttcaattgttgctccatctttaccatatgcaatgttatccttaatgctggatgcaaataacactggctcctggctgacaagaccaatttt |
38525831 |
T |
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| Q |
121 |
ccctctgatccacctgacctgaaattctttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataatt |
220 |
Q |
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||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| | |||| | |
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| T |
38525832 |
ccctctgatccacctaagctgaagttctttcatgttaattccatcgataagtacttcaccggcctgtggatcatagaatctttctaccaaactaataact |
38525931 |
T |
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| Q |
221 |
gtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccg |
320 |
Q |
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|| |||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38525932 |
gtggactttccacttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccg |
38526031 |
T |
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| Q |
321 |
gataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
420 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526032 |
gataactgaaataaacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
38526131 |
T |
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| Q |
421 |
tgtctcaaacattttgtaagccgccgc |
447 |
Q |
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| T |
38526132 |
tgtctcaaacattttgtaagccgccgc |
38526158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 51199554 - 51199472
Alignment:
| Q |
170 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
252 |
Q |
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||||||||||| |||||||||||||| |||||||||| |||| ||| || ||| || |||||||| |||||||| || ||||| |
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| T |
51199554 |
agaacttcaccagcctgtggatcataaaatctctctatcaaactgacaactgtggattttccactcccactttgccctaccaa |
51199472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 327
Target Start/End: Complemental strand, 51145548 - 51145408
Alignment:
| Q |
187 |
tggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatg-aagaga |
285 |
Q |
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| T |
51145548 |
tggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctaccaaagctgcagtagtgccgcttggta-atgaaagaga |
51145450 |
T |
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| Q |
286 |
gaatccattaaatatcagctcctcaggtcttgccggataact |
327 |
Q |
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|||||||| |||||||| || || ||||||| |||||||| |
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| T |
51145449 |
aaatccattgaatatcagttcatctggtcttgtaggataact |
51145408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 327
Target Start/End: Complemental strand, 51156689 - 51156549
Alignment:
| Q |
187 |
tggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatg-aagaga |
285 |
Q |
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|||||||||||||||||||| |||| | | || ||| || || |||||||||||||| || ||||| |||| || || ||||| |||| ||| |||||| |
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| T |
51156689 |
tggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctaccaaagctgcagtagtgccgcttggta-atgaaagaga |
51156591 |
T |
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| Q |
286 |
gaatccattaaatatcagctcctcaggtcttgccggataact |
327 |
Q |
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|||||||| |||||||| || || ||||||| |||||||| |
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| T |
51156590 |
aaatccattgaatatcagttcatctggtcttgtaggataact |
51156549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 51212687 - 51212627
Alignment:
| Q |
183 |
cctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttg |
243 |
Q |
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| T |
51212687 |
cctgtggatcataaaatctctctatcaaatttatcactgttgattttccactcccactttg |
51212627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 49737314 - 49737396
Alignment:
| Q |
170 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
252 |
Q |
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|||| |||||| ||||||||||||| |||||||||| |||| | |||| ||||| || ||||| ||||||||||| ||||| |
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| T |
49737314 |
agaatttcaccaccctgtggatcataaaatctctctatcaaactaataaccgtcgatttcccactcccactttgtcctaccaa |
49737396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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