View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_341 (Length: 260)
Name: NF11453A_low_341
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_341 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 29668836 - 29669076
Alignment:
| Q |
14 |
gaacaacgccatttcagatcgtaaggaaaccccttctgacgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgccacg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29668836 |
gaacaacgccatttcagatcgtaaggaaaccccttctgatgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgccacg |
29668935 |
T |
|
| Q |
114 |
attctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccaaaag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29668936 |
attctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccgaaag |
29669035 |
T |
|
| Q |
214 |
ttgaggagaaaataatcaaggagttaaccactgttcttgag |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29669036 |
ttgaggagaaaataatcaaggagttaaccactgttcttgag |
29669076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 11315133 - 11315194
Alignment:
| Q |
135 |
aacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggt |
196 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||||||| | ||||||||||| ||| |||| |
|
|
| T |
11315133 |
aacttcatcctagctggacgtgacacgtcatcagttgcgttgagctggttcttttggttggt |
11315194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University