View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_349 (Length: 255)
Name: NF11453A_low_349
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_349 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 31506893 - 31506658
Alignment:
| Q |
14 |
agatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
113 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31506893 |
agatcttatttatgaatgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
31506794 |
T |
|
| Q |
114 |
tgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31506793 |
tgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagt |
31506694 |
T |
|
| Q |
214 |
tggaaatactattgtccttagagctagagcaatgtc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31506693 |
tggaaatactattgtccttagagctagagcaatgtc |
31506658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 34495866 - 34496101
Alignment:
| Q |
14 |
agatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34495866 |
agatcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
34495965 |
T |
|
| Q |
114 |
tgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagt |
213 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34495966 |
tgtcggcaacaataccagcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtcccagt |
34496065 |
T |
|
| Q |
214 |
tggaaatactattgtccttagagctagagcaatgtc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34496066 |
tggaaatactattgtccttagagctagagcaatgtc |
34496101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 27607413 - 27607648
Alignment:
| Q |
14 |
agatcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27607413 |
agatcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcac |
27607512 |
T |
|
| Q |
114 |
tgtcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagt |
213 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27607513 |
tgtcggcaacaatacctgcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtcccagt |
27607612 |
T |
|
| Q |
214 |
tggaaatactattgtccttagagctagagcaatgtc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27607613 |
tggaaatactattgtccttagagctagagctatgtc |
27607648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University