View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_354 (Length: 254)
Name: NF11453A_low_354
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_354 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 24666844 - 24666621
Alignment:
| Q |
20 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
24666844 |
ataccgtttgattgaatcaatggttgagatttattgaaaataagattgagaacatctagacattttaacatacaatcttgtccctattatatttcttcat |
24666745 |
T |
|
| Q |
120 |
ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24666744 |
ctttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga |
24666645 |
T |
|
| Q |
220 |
accaatttcttggtgttgataact |
243 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24666644 |
accaatttcttggtgttgataact |
24666621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 34941558 - 34941782
Alignment:
| Q |
20 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat |
119 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||||| |||||| ||||||| |
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|
| T |
34941558 |
ataccgtttgattgaatcaacggttgagatttattgaaaataaagttgagaacatctagacattttaacatacaatcttgtccctgttatatctcttcat |
34941657 |
T |
|
| Q |
120 |
ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga |
219 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
34941658 |
cctcttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaaatgacagga |
34941757 |
T |
|
| Q |
220 |
a-ccaatttcttggtgttgataact |
243 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
34941758 |
acccaatttcttggtgttgataact |
34941782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 18363645 - 18363426
Alignment:
| Q |
20 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat |
119 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
18363645 |
ataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatatttcttcat |
18363546 |
T |
|
| Q |
120 |
ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga |
219 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
18363545 |
cctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacatga |
18363450 |
T |
|
| Q |
220 |
accaatttcttggtgttgataact |
243 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18363449 |
accaatttcttggtgttgataact |
18363426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 36599283 - 36599502
Alignment:
| Q |
20 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat |
119 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
36599283 |
ataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatatttcttcat |
36599382 |
T |
|
| Q |
120 |
ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga |
219 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
36599383 |
cctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacatga |
36599478 |
T |
|
| Q |
220 |
accaatttcttggtgttgataact |
243 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36599479 |
accaatttcttggtgttgataact |
36599502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 8752390 - 8752465
Alignment:
| Q |
121 |
cttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa |
196 |
Q |
| |
|
|||||||||||||||||||| || |||| | | | ||||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
8752390 |
cttttcaactcctctgaaattagtgaatccataggttgcttgctgaaaacatctacatcaattcgaaaatgaaaaa |
8752465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 26240735 - 26240615
Alignment:
| Q |
124 |
ttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacaggaa-cc |
222 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
26240735 |
ttcaactcccttgaaatatgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagaaaccc |
26240636 |
T |
|
| Q |
223 |
aatttcttggtgttgataact |
243 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26240635 |
aatttcttggtgttgataact |
26240615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 26240863 - 26240779
Alignment:
| Q |
20 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccct |
104 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
26240863 |
ataccgtttgattgaatcaatggttgagatttattgaaaataatattgagaacatctagacattttaacatacaatcttgtccct |
26240779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 19697406 - 19697568
Alignment:
| Q |
13 |
gaataatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatt |
112 |
Q |
| |
|
|||||| |||| ||||||||||||||||| || |||||| || |||| |||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19697406 |
gaataaaatactgtttgattgaatcaatgtttgagattttttgaaaa-aaaattgagaacatctagacattttaacatacaatcttgtccctattatatt |
19697504 |
T |
|
| Q |
113 |
tcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatt |
183 |
Q |
| |
|
|||||||| ||||||||||| || | |||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
19697505 |
tcttcatcattttcaactccactaa-------aaatttagaagatgcttgcggaaaacatctacatccatt |
19697568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 13265597 - 13265651
Alignment:
| Q |
20 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacat |
74 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
13265597 |
ataccgttggattaaatcaatggtttagaattattaaaaataaaaatgagaacat |
13265651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 53242722 - 53242900
Alignment:
| Q |
20 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaatt-gagaacatatagacattttaacattaaatcttgt-ccctattatatttcttc |
117 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||| || | ||| |||| ||||||||||||| ||| |
|
|
| T |
53242722 |
ataccatttgattgaatcaatggttaagatttattgaaaataaaatttgagaacatctagacattttcacttacaattttgttccctattatatttgttc |
53242821 |
T |
|
| Q |
118 |
atccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa |
196 |
Q |
| |
|
||||| |||||||| | ||||||||||||||| ||||| | ||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
53242822 |
atcctcttcaactctcttaaaatctgtaaatctaaaagatacatgcagaaaacatctatatccattcggaaatgaaaaa |
53242900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 43479456 - 43479315
Alignment:
| Q |
68 |
agaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaa |
167 |
Q |
| |
|
||||||| |||||||||| |||| ||| |||| ||||||||||||||||||| | |||||||| | ||||||||||||||||||||||| |
|
|
| T |
43479456 |
agaacatctagacattttcacatacaatattgttcctattatatttcttcatcttattcaactctt-----------aaatctagaagatgcttgcagaa |
43479368 |
T |
|
| Q |
168 |
aacatctacatccatttg-aaaatgaaaaaccagatatgggaaagtgacagga |
219 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||| | || ||||||| |||| |
|
|
| T |
43479367 |
aacatctacatccattcgaaaaatgaaaaaacagagacggaaaagtgatagga |
43479315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 32566563 - 32566462
Alignment:
| Q |
29 |
gattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaa |
128 |
Q |
| |
|
|||||| |||||||| ||||||||| |||| ||||||||||||| || ||||||| |||| |||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
32566563 |
gattgattcaatggtcaagatttattgaaaa--aaattgagaacatctaaacattttcacatacaatcttgtccctattatatttc-tcatcttattcaa |
32566467 |
T |
|
| Q |
129 |
ctcct |
133 |
Q |
| |
|
||||| |
|
|
| T |
32566466 |
ctcct |
32566462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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