View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_355 (Length: 254)
Name: NF11453A_low_355
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_355 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 6236545 - 6236342
Alignment:
| Q |
36 |
cctgatgtagaccttgttatgggttctggccctctctagttttattgaatttcttcgcttgatcnnnnnnnnnnnnnnttagattttcacctatcaccta |
135 |
Q |
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| T |
6236545 |
cctgatgtagactttgttatgggttctggccctcttcagttttattgaatttcttcgcttgat--aaaaaaaaaaaaattagattttcacctatcaccta |
6236448 |
T |
|
| Q |
136 |
ggttttcaatttctattaactaaagcgaaaggggaaatatggttttgtagacttcttctacttttgttgaatgtgggaacactataatttagaaacacca |
235 |
Q |
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| T |
6236447 |
ggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacactaaaatttagaaacacca |
6236348 |
T |
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| Q |
236 |
tgatat |
241 |
Q |
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|||||| |
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| T |
6236347 |
tgatat |
6236342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 33891807 - 33891908
Alignment:
| Q |
114 |
ttagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggttttgtagacttcttctacttttgttgaatgtggga |
213 |
Q |
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| T |
33891807 |
ttagattttcacccataaactaggttttcaatta----taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtgggg |
33891902 |
T |
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| Q |
214 |
acacta |
219 |
Q |
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|||||| |
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| T |
33891903 |
acacta |
33891908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 33952441 - 33952340
Alignment:
| Q |
114 |
ttagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggttttgtagacttcttctacttttgttgaatgtggga |
213 |
Q |
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||||||||||||| || | |||||||||||||| ||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33952441 |
ttagattttcacccataaactaggttttcaatta----taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtgggg |
33952346 |
T |
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| Q |
214 |
acacta |
219 |
Q |
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|||||| |
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| T |
33952345 |
acacta |
33952340 |
T |
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