View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_357 (Length: 253)
Name: NF11453A_low_357
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_357 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 44166939 - 44167181
Alignment:
| Q |
6 |
tttggtgttccacactttgattgttctgtcccatgaaacagaatacaataaggttccatctttagataaggcaagagatgagactgtgtcaacatggtgc |
105 |
Q |
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| T |
44166939 |
tttggttttccacactttgattgttctgtcccatgaaacagaatacaataaggttccatctttagataaggcaagagatgagactgtgtcaacatggtgc |
44167038 |
T |
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| Q |
106 |
acccatgtgcattttttgtgccttcgaatattaacatggtttttcgggataaagattttcgtgaaacggtctatgaatgttgggagtgtggctaaatggg |
205 |
Q |
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| T |
44167039 |
acccatgtgcattttttgtgccttcgaatattaacatggtttttcgggataaagattttcgtgaaacggtctatgaatgttgggagtgtggctaaatggg |
44167138 |
T |
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| Q |
206 |
tgaacttttgatgttgagattcgttgttgatattggtgatttt |
248 |
Q |
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| T |
44167139 |
tgaacttttgttgttgagattcgttgttgatattggtgatttt |
44167181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 35312827 - 35312970
Alignment:
| Q |
21 |
tttgattgttctgtcccatgaaacagaatacaataaggttccatctttagataaggcaagagatgagactgtgtcaacatggtgcacccatgtgcatttt |
120 |
Q |
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| T |
35312827 |
tttgattgttctgtcccatgaaacagagtacaaaaactttccatctttagacagagcaagtgaagaaacagtgtccacatgatgaacccacgtgcatttt |
35312926 |
T |
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| Q |
121 |
ttgtgccttcgaatattaacatggtttttcgggataaagatttt |
164 |
Q |
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| T |
35312927 |
ttgtgtctacgaatttggacatggttttttgggattaagatttt |
35312970 |
T |
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