View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_36 (Length: 445)
Name: NF11453A_low_36
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 6 - 439
Target Start/End: Original strand, 4301853 - 4302284
Alignment:
| Q |
6 |
tatggtgttgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgaggtttatatagtggggggacaca |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4301853 |
tatggtattgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgaggtttatatagtggggggacaca |
4301952 |
T |
|
| Q |
106 |
tcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctagctgccaaaacagtgttcgaatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4301953 |
tcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctagctgccaaaacagtgttcgaatc |
4302052 |
T |
|
| Q |
206 |
cattgattacccagcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttgtt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4302053 |
cattgattacccagcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacaccagacgatgtattttccaagcgtttgtt |
4302152 |
T |
|
| Q |
306 |
gtcaagcctacaccatttgaagcaaattcatgacagatatcaccatatggacacattcctataagagaagttctaggtgcagtagtcttggttgataagg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4302153 |
gtcaagcctacaccatttgaagcaaattcatgacagatatcaccatatggacacattcc--taagagaagttctaggtgcagtagtcttggttgataagg |
4302250 |
T |
|
| Q |
406 |
cttcaattcatatcctaaatggaactgcacttgt |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
4302251 |
cttcaattcatatcctaaatggaactgcacttgt |
4302284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 225 - 355
Target Start/End: Complemental strand, 49100586 - 49100456
Alignment:
| Q |
225 |
agtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttgttgtcaagcctacaccatttg |
324 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| || ||||||||||||||| |||| | || ||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
49100586 |
agtgagtttgtttgcaacgtttataggtaggctgcacgggacaagaaaaacaccagaggttgcattttccaagcgtctgttgtcaagcctataccatttg |
49100487 |
T |
|
| Q |
325 |
aagcaaattcatgacagatatcaccatatgg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49100486 |
aagcaaattcatgacagatatcaccatatgg |
49100456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 49112546 - 49112454
Alignment:
| Q |
91 |
tagtggggggacacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctag |
183 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | ||||||||| ||||||||||| |
|
|
| T |
49112546 |
tagtgggggggcacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttccttctaaccaatatgcagaattcaacatgttcctag |
49112454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 49100762 - 49100660
Alignment:
| Q |
81 |
gaggtttatatagtggggggacacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcc |
180 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||| |||||||| | ||||||||||| | ||||||||| |||||||| |
|
|
| T |
49100762 |
gaggtttatgtagtgggaggacacatcagcaggaatacagaagacaaaggaaatgttttttcagtcccttcaaaccaatatgcagaattcaacatgttcc |
49100663 |
T |
|
| Q |
181 |
tag |
183 |
Q |
| |
|
||| |
|
|
| T |
49100662 |
tag |
49100660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 204 - 355
Target Start/End: Complemental strand, 49112401 - 49112250
Alignment:
| Q |
204 |
tccattgattacccagcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttg |
303 |
Q |
| |
|
|||||||| || ||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||| | ||| ||| ||||| || | |
|
|
| T |
49112401 |
tccattgagcactcagcgccaagtgagttcatttgcaactattataggtagattagaagggacaagaaaaacatcagaggttgtgtttaccaagagtcta |
49112302 |
T |
|
| Q |
304 |
ttgtcaagcctacaccatttgaagcaaattcatgacagatatcaccatatgg |
355 |
Q |
| |
|
|||||||||||| ||| ||||||||||| || |||||||| ||||||||| |
|
|
| T |
49112301 |
ttgtcaagcctaaaccgtttgaagcaaaccaataacagatattaccatatgg |
49112250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 49100306 - 49100251
Alignment:
| Q |
354 |
ggacacattcctataagagaagttctaggtgcagtagtcttggttgataaggcttcaa |
411 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
49100306 |
ggacacattcctag--gagaaattctaggtgcagtagtcttggctgaaaaggcttcaa |
49100251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 5085365 - 5085423
Alignment:
| Q |
26 |
tgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgagg |
84 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5085365 |
tgtattcgagaaaagaggaattgatgaaacacaacccttgaaatttgtaactgatgagg |
5085423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University